BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_706882251865).
1 sequences; 60 total letters
Query= RU05573
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
yueji_03103 65.9 3e-16
> yueji_03103
Length=60
Score = 65.9 bits (34), Expect = 3e-16
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 401 GATATATTTTGATGTTGGGATTATCACAATTTTA 434
||||||||||||||||||||||||||||||||||
Sbjct 1 GATATATTTTGATGTTGGGATTATCACAATTTTA 34
Score = 56.3 bits (29), Expect = 3e-13
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 429 ATTTTATCTATCTGAGTTTCGCTTGGTAA 457
|||||||||||||||||||||||||||||
Sbjct 60 ATTTTATCTATCTGAGTTTCGCTTGGTAA 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 23972
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_706882251865).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
|