BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_3809177101097).
1 sequences; 60 total letters
Query= RU06189
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
yueji_03180 81.3 3e-20
> yueji_03180
Length=60
Score = 81.3 bits (42), Expect = 3e-20
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1645 AGAGAGAGAGAGAGAGAGAACTATGAGATCGTTCGCTGGATT 1686
||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AGAGAGAGAGAGAGAGAGAACTATGAGATCGTTCGCTGGATT 60
Score = 71.7 bits (37), Expect = 2e-17
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1617 GATCAAACAAACTTGCACAGAGAGAGAGAGAGAGAGA 1653
|||||||||||||||||||||||||||||||||||||
Sbjct 1 GATCAAACAAACTTGCACAGAGAGAGAGAGAGAGAGA 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 86904
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_3809177101097).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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