BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_4732222904890).
1 sequences; 60 total letters
Query= RU09203
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
yueji_03189 110 3e-29
> yueji_03189
Length=60
Score = 110 bits (57), Expect = 3e-29
Identities = 57/57 (100%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 55 ATTCTTTTGTTGGTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAGTTGGCT 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ATTCTTTTGTTGGTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAGTTGGCT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 39270
Database: User specified sequence set (Input: /tmp/rose_4732222904890).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
|