BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_6293078075136).
1 sequences; 60 total letters
Query= RU02180
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
yueji_04716 96.6 3e-25
> yueji_04716
Length=60
Score = 96.6 bits (50), Expect = 3e-25
Identities = 54/55 (98%), Gaps = 1/55 (2%)
Strand=Plus/Plus
Query 680 ATAATTAGGGTTTTG-CAATCGGCGAGTCGGAGTGAAGCGTCTAAACCCCCAAAA 733
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAATTAGGGTTTTGTCAATCGGCGAGTCGGAGTGAAGCGTCTAAACCCCCAAAA 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 40086
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_6293078075136).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
|