BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_9719519085224).
1 sequences; 60 total letters
Query= RU05860
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
yueji_05515 94.7 2e-24
> yueji_05515
Length=60
Score = 94.7 bits (49), Expect = 2e-24
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 1147 CCAAATATAGAGAAGAAGAACATGAAAGCAGTTGATATCTGCACTACTC 1195
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 CCAAATATAGAGAAGAAGAACATGAAAGCAGTTGATATCTGCACTACTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 79917
Database: User specified sequence set (Input: /tmp/rose_9719519085224).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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