BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_3700493137325).
1 sequences; 60 total letters
Query= RU27192
Length=583
Score E
Sequences producing significant alignments: (Bits) Value
yueji_07074 104 1e-27
> yueji_07074
Length=60
Score = 104 bits (54), Expect = 1e-27
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 25 TTCTGTGACTTGTTAGTTTGGCGCTTTCTCAACTCCCTCTCAAACTCTTTTTTTTTAACG 84
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 TTCTGTGACTTGTTAGTTTGGCGCTTTCTCAACTCCCTCTCAAACTCTGGTTTTTTAACG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 29900
Database: User specified sequence set (Input: /tmp/rose_3700493137325).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
|