BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_2066106352462).
1 sequences; 60 total letters
Query= RU06648
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
yueji_07100 77.4 3e-19
> yueji_07100
Length=60
Score = 77.4 bits (40), Expect = 3e-19
Identities = 54/60 (90%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 1184 AGTTTCTCCAAGTTGATGACTGGGAAGTTCTCCATCTCTCTCTC-TCTCTCTCTCTCTCT 1242
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Sbjct 1 AGTTTCTCCAAGTTGATGACTGGGAAGTTCTCCATTTTTCCGACTTCTCTCTCTCTCTCT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 64311
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_2066106352462).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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