BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_6469833993791).
1 sequences; 60 total letters
Query= RU03010
Length=245
Score E
Sequences producing significant alignments: (Bits) Value
yueji_08591 96.6 1e-25
> yueji_08591
Length=60
Score = 96.6 bits (50), Expect = 1e-25
Identities = 58/60 (97%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 175 GAGCTGCTTCTTCCTCCGTCACAATTGAGATACTTATTTCTCTCTTTT-CTGAA-TATCA 232
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Sbjct 1 GAGCTGCTTCTTCCTCCGTCACAATTGAGATACTTATTTCTCTCTTTTTCTGAAATATCA 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 12324
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_6469833993791).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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