BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_1346572070355).
1 sequences; 60 total letters
Query= RU25823
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
yueji_08604 110 5e-29
> yueji_08604
Length=60
Score = 110 bits (57), Expect = 5e-29
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1147 GGCCATAGTTGCAGCTTTTGGGTTTTTTCTTAGACTCCTTTTCTTTTCCACAATCTAAAC 1206
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GGCCATAGTTGCAGCTTTTGGGTTTTTTCTTAGACTTCTTTTCTTTTCCACAATCTAAAC 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 61302
Database: User specified sequence set (Input: /tmp/rose_1346572070355).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
|