BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_2324289424318).
1 sequences; 60 total letters
Query= RU14220
Length=215
Score E
Sequences producing significant alignments: (Bits) Value
yueji_10307 87.0 7e-23
> yueji_10307
Length=60
Score = 87.0 bits (45), Expect = 7e-23
Identities = 57/60 (95%), Gaps = 3/60 (5%)
Strand=Plus/Minus
Query 4 TCGTCACCCA-TC-TTCTTCTTCTTCTTCTTCACAATTTTGAAGCCAACTCAAA-CTCTG 60
|||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 TCGTCACCCAGTCTTTCTTCTTCTTCTTCTTCACAATTTTGAAGCCAACTCAAAACTCTG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 11024
Database: User specified sequence set (Input: /tmp/rose_2324289424318).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
|