BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_3169604352183).
1 sequences; 60 total letters
Query= RU04053
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
yueji_10379 90.9 4e-23
> yueji_10379
Length=60
Score = 90.9 bits (47), Expect = 4e-23
Identities = 57/60 (95%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 1133 TTCACGTCAGCTTGTCTTCTGTCATATTTTT-GTT-CCCTTCTGAGGTTAGCAATGCCAC 1190
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 1 TTCACGTCAGCTTGTCTTCTGTCATATTTTTTGTTCCCCTTCCGAGGTTAGCAATGCCAC 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 93126
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_3169604352183).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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