BLASTX 7.6.2
Query= RU00264 /QuerySize=844
(843 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G80000.1 | Symbols: | FUNCTIONS IN: molecular... 150 1e-036
TAIR9_protein||AT1G80000.2 | Symbols: | FUNCTIONS IN: molecular... 150 1e-036
TAIR9_protein||AT1G15280.2 | Symbols: | glycine-rich protein | ... 86 3e-017
TAIR9_protein||AT1G15280.1 | Symbols: | glycine-rich protein | ... 85 6e-017
>TAIR9_protein||AT1G80000.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s:
CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis
thaliana protein match is: glycine-rich protein (TAIR:AT1G15280.2); Has
2243 Blast hits to 1704 proteins in 212 species: Archae - 16; Bacteria
- 151; Metazoa - 691; Fungi - 281; Plants - 163; Viruses - 64; Other
Eukaryotes - 877 (source: NCBI BLink). | chr1:30093195-30096742
FORWARD
Length = 606
Score = 150 bits (378), Expect = 1e-036
Identities = 87/221 (39%), Positives = 118/221 (53%), Gaps = 10/221 (4%)
Frame = +3
Query: 105 PFAVPTAGAFYMHDDRFRDNAGGRNRRTHGGRKLWESKDDRKWGHDKFEEITLHERHHEE 284
PFAVPTAGAFYMHDDRF++ NRR GGR+LW+S+D+RKWGHDKFEE+ ++ ++
Sbjct: 131 PFAVPTAGAFYMHDDRFQELDAASNRRMRGGRRLWQSRDERKWGHDKFEEMNTQKQQYDR 190
Query: 285 XXXXXXXXXXXXXXXXXXXXXYATGNRSKEYENNNQXXX--XXXXXXXXXXXYEPAFRNN 458
+ GN SKE+ N YE A RN
Sbjct: 191 --RTSRGRGRGRGQGRGQDRGQSRGNNSKEFTGNGHQNQFPKAVTRGRGARRYEVALRNG 248
Query: 459 RQTSSTQNRQSGKPVDKTSQTNSERTFAPPSNAESDSVPARKNVFASSLNSASPPFYPSG 638
Q S Q +QS + S + R + E++++ A+KNVFASSLNSASPPFYPS
Sbjct: 249 NQAPSVQTKQSQNSSVEVSHVDLGRPPTETATLETEAIQAKKNVFASSLNSASPPFYPSR 308
Query: 639 SSNKEINLNQKRDAHAGSAKR--NARPSVSVENFSGRQTNA 755
S+N NL QK D AG + N P+ + + F ++++
Sbjct: 309 SNN---NLAQK-DVQAGMGRLHINENPNPTGKKFGNTKSSS 345
>TAIR9_protein||AT1G80000.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s:
CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis
thaliana protein match is: glycine-rich protein (TAIR:AT1G15280.2); Has
2243 Blast hits to 1704 proteins in 212 species: Archae - 16; Bacteria
- 151; Metazoa - 691; Fungi - 281; Plants - 163; Viruses - 64; Other
Eukaryotes - 877 (source: NCBI BLink). | chr1:30093195-30096742
FORWARD
Length = 606
Score = 150 bits (378), Expect = 1e-036
Identities = 87/221 (39%), Positives = 118/221 (53%), Gaps = 10/221 (4%)
Frame = +3
Query: 105 PFAVPTAGAFYMHDDRFRDNAGGRNRRTHGGRKLWESKDDRKWGHDKFEEITLHERHHEE 284
PFAVPTAGAFYMHDDRF++ NRR GGR+LW+S+D+RKWGHDKFEE+ ++ ++
Sbjct: 131 PFAVPTAGAFYMHDDRFQELDAASNRRMRGGRRLWQSRDERKWGHDKFEEMNTQKQQYDR 190
Query: 285 XXXXXXXXXXXXXXXXXXXXXYATGNRSKEYENNNQXXX--XXXXXXXXXXXYEPAFRNN 458
+ GN SKE+ N YE A RN
Sbjct: 191 --RTSRGRGRGRGQGRGQDRGQSRGNNSKEFTGNGHQNQFPKAVTRGRGARRYEVALRNG 248
Query: 459 RQTSSTQNRQSGKPVDKTSQTNSERTFAPPSNAESDSVPARKNVFASSLNSASPPFYPSG 638
Q S Q +QS + S + R + E++++ A+KNVFASSLNSASPPFYPS
Sbjct: 249 NQAPSVQTKQSQNSSVEVSHVDLGRPPTETATLETEAIQAKKNVFASSLNSASPPFYPSR 308
Query: 639 SSNKEINLNQKRDAHAGSAKR--NARPSVSVENFSGRQTNA 755
S+N NL QK D AG + N P+ + + F ++++
Sbjct: 309 SNN---NLAQK-DVQAGMGRLHINENPNPTGKKFGNTKSSS 345
>TAIR9_protein||AT1G15280.2 | Symbols: | glycine-rich protein |
chr1:5252538-5256214 FORWARD
Length = 586
Score = 86 bits (210), Expect = 3e-017
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = +3
Query: 111 AVPTAGAFYMHDDRFRDNAGGRNRRTHGGRKLWESKDDRKWGHDKFEEITLHERHHEE 284
AVPT GAFYMHDDRF++ + G NRR GGR+ W S ++RKWGHDKFEE+ E+H ++
Sbjct: 110 AVPTGGAFYMHDDRFQEMSAGGNRRMRGGRRQWGSGEERKWGHDKFEEMNTGEKHSDQ 167
Score = 52 bits (122), Expect = 5e-007
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Frame = +3
Query: 450 RNNRQTSSTQNRQ------SGKPVDKTSQTNSERTFAPPSNAESDSVPARKNVFASSLNS 611
RN Q S Q++Q S +K +S R+ P+ E+ A+KNV SSL+S
Sbjct: 223 RNENQAHSEQSKQLRNSNGSQNSREKMPHLDSRRSPTAPAKTENQGAHAKKNVAVSSLSS 282
Query: 612 ASPPFYPSGSSNKEIN 659
ASPPFYPS S+ ++
Sbjct: 283 ASPPFYPSAPSSNVVH 298
>TAIR9_protein||AT1G15280.1 | Symbols: | glycine-rich protein |
chr1:5252538-5256214 FORWARD
Length = 585
Score = 85 bits (208), Expect = 6e-017
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +3
Query: 111 AVPTAGAFYMHDDRFRDNAGGRNRRTHGGRKLWESKDDRKWGHDKFEEITLHERHHE 281
AVPT GAFYMHDDRF++ + G NRR GGR+ W S ++RKWGHDKFEE+ E+H +
Sbjct: 110 AVPTGGAFYMHDDRFQEMSAGGNRRMRGGRRQWGSGEERKWGHDKFEEMNTGEKHSD 166
Score = 52 bits (122), Expect = 5e-007
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Frame = +3
Query: 450 RNNRQTSSTQNRQ------SGKPVDKTSQTNSERTFAPPSNAESDSVPARKNVFASSLNS 611
RN Q S Q++Q S +K +S R+ P+ E+ A+KNV SSL+S
Sbjct: 222 RNENQAHSEQSKQLRNSNGSQNSREKMPHLDSRRSPTAPAKTENQGAHAKKNVAVSSLSS 281
Query: 612 ASPPFYPSGSSNKEIN 659
ASPPFYPS S+ ++
Sbjct: 282 ASPPFYPSAPSSNVVH 297
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,173,568
Number of Sequences: 33410
Number of Extensions: 122173568
Number of Successful Extensions: 10168541
Number of sequences better than 0.0: 0
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