BLASTX 7.6.2
Query= RU00488 /QuerySize=399
(398 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G36720.1 | Symbols: | PHD finger transcriptio... 135 1e-032
TAIR9_protein||AT2G37520.1 | Symbols: | PHD finger family prote... 121 2e-028
TAIR9_protein||AT3G53680.1 | Symbols: | PHD finger transcriptio... 114 2e-026
TAIR9_protein||AT2G27980.1 | Symbols: | protein binding / zinc ... 79 6e-016
TAIR9_protein||AT3G14980.1 | Symbols: | PHD finger transcriptio... 69 1e-012
TAIR9_protein||AT5G36740.1 | Symbols: | PHD finger family prote... 67 3e-012
TAIR9_protein||AT5G36670.1 | Symbols: | PHD finger family prote... 67 3e-012
TAIR9_protein||AT1G05380.1 | Symbols: | DNA binding | chr1:1577... 65 2e-011
TAIR9_protein||AT1G05380.2 | Symbols: | DNA binding | chr1:1577... 65 2e-011
TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REM... 59 6e-010
>TAIR9_protein||AT2G36720.1 | Symbols: | PHD finger transcription factor,
putative | chr2:15393447-15399189 FORWARD
Length = 1008
Score = 135 bits (338), Expect = 1e-032
Identities = 59/125 (47%), Positives = 75/125 (60%)
Frame = -1
Query: 398 CNTEVSPSQFEAHAGCSSRRKPYHNIFISNGVSLHELAXXXXXXXXXXTEDSDDLCFICR 219
C EVSPS FEAHAG +SRRKPY I+ SNGVSLHE A D++DLC IC
Sbjct: 563 CKCEVSPSLFEAHAGWASRRKPYFYIYTSNGVSLHEWATTFSHGRKYSANDNNDLCVICA 622
Query: 218 KGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHCQTMFDRDIDAEXXXXXXXXXXXXXX 39
GG ++ CDSCPR FH C+SLP++P G W+CK+C+ F +I E
Sbjct: 623 DGGNLLLCDSCPRAFHIECVSLPSIPRGNWHCKYCENKFTSEIAGEYNVNSSAVGQLEGV 682
Query: 38 DPINK 24
DP+++
Sbjct: 683 DPVDQ 687
>TAIR9_protein||AT2G37520.1 | Symbols: | PHD finger family protein |
chr2:15745033-15749615 REVERSE
Length = 855
Score = 121 bits (302), Expect = 2e-028
Identities = 49/95 (51%), Positives = 65/95 (68%)
Frame = -1
Query: 398 CNTEVSPSQFEAHAGCSSRRKPYHNIFISNGVSLHELAXXXXXXXXXXTEDSDDLCFICR 219
C+ E+SPSQFEAHAG ++RR+PY +IFIS+G+SLH++A T DSDD+C IC
Sbjct: 441 CSREISPSQFEAHAGMAARRQPYRHIFISSGLSLHDIAMSLANGHVITTGDSDDMCSICG 500
Query: 218 KGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHC 114
GG ++ C CP+ FH CL ++P GTWYC C
Sbjct: 501 DGGDLLLCAGCPQAFHTACLKFQSMPEGTWYCSSC 535
>TAIR9_protein||AT3G53680.1 | Symbols: | PHD finger transcription factor,
putative | chr3:19892863-19897412 REVERSE
Length = 840
Score = 114 bits (284), Expect = 2e-026
Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Frame = -1
Query: 398 CNTEVSPSQFEAHAGCSSRRKPYHNIFISNGVSLHELA-XXXXXXXXXXTEDSDDLCFIC 222
C+T++SPSQFEAHAG + RR+PY I IS+G+SLH++A T DSDD+C IC
Sbjct: 433 CDTKISPSQFEAHAGMAGRRQPYRRIHISSGLSLHDIAVSLADGGHVITTGDSDDMCSIC 492
Query: 221 RKGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHC 114
GG ++ C CP+ FH CL ++P GTWYC C
Sbjct: 493 GNGGDLLLCAGCPQAFHTACLKFQSMPEGTWYCSSC 528
>TAIR9_protein||AT2G27980.1 | Symbols: | protein binding / zinc ion binding |
chr2:11913950-11919741 REVERSE
Length = 1058
Score = 79 bits (194), Expect = 6e-016
Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Frame = -1
Query: 398 CNTEVSPSQFEAHAGCSSRRKPYHNIFISNGVSLHELAXXXXXXXXXXTEDSDDLCFICR 219
CN VSPS FEAHAGC+SRRKP+ +I+ +NGVSLHEL+ ++DDLC ICR
Sbjct: 643 CNKVVSPSTFEAHAGCASRRKPFQHIYTTNGVSLHELSVALSMDQRFSIHENDDLCSICR 702
Query: 218 KGGKVICCDSCP 183
G C S P
Sbjct: 703 DG----VCASLP 710
>TAIR9_protein||AT3G14980.1 | Symbols: | PHD finger transcription factor,
putative | chr3:5039931-5044811 REVERSE
Length = 1190
Score = 69 bits (166), Expect = 1e-012
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = -1
Query: 251 EDSDDLCFICRKGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHC 114
+ +DD C +C GG++ICCD+CP FH CLS+ +P G+WYC C
Sbjct: 723 DPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSSC 768
>TAIR9_protein||AT5G36740.1 | Symbols: | PHD finger family protein |
chr5:14460790-14465727 FORWARD
Length = 1180
Score = 67 bits (162), Expect = 3e-012
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = -1
Query: 251 EDSDDLCFICRKGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHCQTMF 102
+ +DD C IC GG +ICCD CP FH CL + P+G WYC +C F
Sbjct: 647 DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKF 696
>TAIR9_protein||AT5G36670.1 | Symbols: | PHD finger family protein |
chr5:14401491-14406427 FORWARD
Length = 1194
Score = 67 bits (162), Expect = 3e-012
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = -1
Query: 251 EDSDDLCFICRKGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHCQTMF 102
+ +DD C IC GG +ICCD CP FH CL + P+G WYC +C F
Sbjct: 647 DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKF 696
>TAIR9_protein||AT1G05380.1 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1139
Score = 65 bits (156), Expect = 2e-011
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = -1
Query: 251 EDSDDLCFICRKGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHCQTMF 102
+ +DD C IC GG +ICCD CP +H CL + +P+G W+C +C F
Sbjct: 622 DPNDDACGICGDGGDLICCDGCPSTYHQNCLGMQVLPSGDWHCPNCTCKF 671
>TAIR9_protein||AT1G05380.2 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1139
Score = 65 bits (156), Expect = 2e-011
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = -1
Query: 251 EDSDDLCFICRKGGKVICCDSCPRVFHAGCLSLPTVPNGTWYCKHCQTMF 102
+ +DD C IC GG +ICCD CP +H CL + +P+G W+C +C F
Sbjct: 622 DPNDDACGICGDGGDLICCDGCPSTYHQNCLGMQVLPSGDWHCPNCTCKF 671
>TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/ nucleic acid
binding / protein binding / zinc ion binding | chr5:18083659-18092162
REVERSE
Length = 2243
Score = 59 bits (142), Expect = 6e-010
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -1
Query: 233 CFICRKGGKVICCDSCPRVFHAGCLSLP--TVPNGTWYCKHC 114
C IC GG ++CCDSCPR +H CL+ P +PNG W C C
Sbjct: 78 CVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKC 119
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,794,225
Number of Sequences: 33410
Number of Extensions: 182794225
Number of Successful Extensions: 15261447
Number of sequences better than 0.0: 0
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