BLASTX 7.6.2
Query= RU00510 /QuerySize=674
(673 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G55550.1 | Symbols: | RNA recognition motif (... 161 4e-040
TAIR9_protein||AT5G55550.3 | Symbols: | RNA recognition motif (... 161 4e-040
TAIR9_protein||AT5G55550.2 | Symbols: | RNA recognition motif (... 161 4e-040
TAIR9_protein||AT3G07810.1 | Symbols: | heterogeneous nuclear r... 150 1e-036
TAIR9_protein||AT3G07810.2 | Symbols: | heterogeneous nuclear r... 150 1e-036
TAIR9_protein||AT4G26650.1 | Symbols: | RNA recognition motif (... 149 2e-036
TAIR9_protein||AT4G26650.2 | Symbols: | RNA recognition motif (... 149 2e-036
TAIR9_protein||AT5G47620.1 | Symbols: | heterogeneous nuclear r... 143 1e-034
TAIR9_protein||AT5G47620.2 | Symbols: | heterogeneous nuclear r... 143 1e-034
TAIR9_protein||AT2G33410.1 | Symbols: | heterogeneous nuclear r... 132 2e-031
TAIR9_protein||AT4G14300.1 | Symbols: | heterogeneous nuclear r... 131 6e-031
TAIR9_protein||AT1G17640.1 | Symbols: | RNA recognition motif (... 95 4e-020
TAIR9_protein||AT3G13224.1 | Symbols: | RNA recognition motif (... 90 1e-018
TAIR9_protein||AT3G13224.2 | Symbols: | RNA recognition motif (... 90 1e-018
TAIR9_protein||AT5G40490.1 | Symbols: | RNA recognition motif (... 84 7e-017
TAIR9_protein||AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARA... 78 4e-015
TAIR9_protein||AT1G22330.1 | Symbols: | RNA binding / nucleic a... 75 2e-014
TAIR9_protein||AT2G46780.1 | Symbols: | RNA binding / nucleic a... 75 4e-014
TAIR9_protein||AT1G33470.1 | Symbols: | RNA recognition motif (... 74 7e-014
TAIR9_protein||AT1G33470.2 | Symbols: | RNA recognition motif (... 74 7e-014
TAIR9_protein||AT4G36960.1 | Symbols: | RNA recognition motif (... 73 2e-013
TAIR9_protein||AT4G36960.2 | Symbols: | RNA recognition motif (... 73 2e-013
TAIR9_protein||AT1G78260.1 | Symbols: | RNA recognition motif (... 72 2e-013
TAIR9_protein||AT1G78260.2 | Symbols: | RNA recognition motif (... 72 2e-013
TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 72 4e-013
TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 72 4e-013
TAIR9_protein||AT1G60650.1 | Symbols: | glycine-rich RNA-bindin... 70 8e-013
TAIR9_protein||AT1G60650.2 | Symbols: | glycine-rich RNA-bindin... 70 8e-013
TAIR9_protein||AT3G54770.1 | Symbols: | RNA recognition motif (... 70 1e-012
>TAIR9_protein||AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502077-22503658 REVERSE
Length = 449
Score = 161 bits (406), Expect = 4e-040
Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 4/138 (2%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDEE+L++YF NYG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GG----SAHAKQNWGCTWFSWSWTHEKDLCWGVLAST 66
+RV+ DKH+ID RTVEAKK HA + K + G L S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 65 VTENDFKTYFDQFGTVTD 12
+TE +FK YFDQFGT+ D
Sbjct: 121 ITEEEFKNYFDQFGTIAD 138
>TAIR9_protein||AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502135-22503658 REVERSE
Length = 461
Score = 161 bits (406), Expect = 4e-040
Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 4/138 (2%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDEE+L++YF NYG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GG----SAHAKQNWGCTWFSWSWTHEKDLCWGVLAST 66
+RV+ DKH+ID RTVEAKK HA + K + G L S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 65 VTENDFKTYFDQFGTVTD 12
+TE +FK YFDQFGT+ D
Sbjct: 121 ITEEEFKNYFDQFGTIAD 138
>TAIR9_protein||AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502135-22503658 REVERSE
Length = 461
Score = 161 bits (406), Expect = 4e-040
Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 4/138 (2%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDEE+L++YF NYG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GG----SAHAKQNWGCTWFSWSWTHEKDLCWGVLAST 66
+RV+ DKH+ID RTVEAKK HA + K + G L S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 65 VTENDFKTYFDQFGTVTD 12
+TE +FK YFDQFGT+ D
Sbjct: 121 ITEEEFKNYFDQFGTIAD 138
>TAIR9_protein||AT3G07810.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr3:2492875-2495052
FORWARD
Length = 495
Score = 150 bits (377), Expect = 1e-036
Identities = 78/138 (56%), Positives = 97/138 (70%), Gaps = 2/138 (1%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
M+ D GK+FIGGISWDT+EE+LKEYF ++GEV+EAVI++DR TGRARGFGFVVFADPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 233 DRVVKDKHMIDSRTVEAKKGC--S*GGSAHAKQNWGCTWFSWSWTHEKDLCWGVLASTVT 60
+ V+ +KH ID R VEAKK + + + + G L S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 59 ENDFKTYFDQFGTVTDVV 6
E+DFKTYF+QFGT TDVV
Sbjct: 121 ESDFKTYFEQFGTTTDVV 138
>TAIR9_protein||AT3G07810.2 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr3:2492875-2495102
FORWARD
Length = 496
Score = 150 bits (377), Expect = 1e-036
Identities = 78/138 (56%), Positives = 97/138 (70%), Gaps = 2/138 (1%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
M+ D GK+FIGGISWDT+EE+LKEYF ++GEV+EAVI++DR TGRARGFGFVVFADPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 233 DRVVKDKHMIDSRTVEAKKGC--S*GGSAHAKQNWGCTWFSWSWTHEKDLCWGVLASTVT 60
+ V+ +KH ID R VEAKK + + + + G L S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 59 ENDFKTYFDQFGTVTDVV 6
E+DFKTYF+QFGT TDVV
Sbjct: 121 ESDFKTYFEQFGTTTDVV 138
>TAIR9_protein||AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445552-13447592 FORWARD
Length = 456
Score = 149 bits (375), Expect = 2e-036
Identities = 77/135 (57%), Positives = 94/135 (69%), Gaps = 7/135 (5%)
Frame = -3
Query: 404 DLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRV 225
DLGK+FIGGISWDTDEE+L+EYF YG++VEAVIMRDR TGRARGFGF+VFADP+VA+RV
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 224 VKDKHMIDSRTVEAKKGCS*GGSAHAKQNWGCTWF-------SWSWTHEKDLCWGVLAST 66
+ DKH+ID RTVEAKK K++ + K + G L S+
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132
Query: 65 VTENDFKTYFDQFGT 21
+TE +FK YFDQFGT
Sbjct: 133 ITEAEFKNYFDQFGT 147
>TAIR9_protein||AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445265-13447592 FORWARD
Length = 453
Score = 149 bits (375), Expect = 2e-036
Identities = 77/135 (57%), Positives = 94/135 (69%), Gaps = 7/135 (5%)
Frame = -3
Query: 404 DLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRV 225
DLGK+FIGGISWDTDEE+L+EYF YG++VEAVIMRDR TGRARGFGF+VFADP+VA+RV
Sbjct: 10 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 69
Query: 224 VKDKHMIDSRTVEAKKGCS*GGSAHAKQNWGCTWF-------SWSWTHEKDLCWGVLAST 66
+ DKH+ID RTVEAKK K++ + K + G L S+
Sbjct: 70 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 129
Query: 65 VTENDFKTYFDQFGT 21
+TE +FK YFDQFGT
Sbjct: 130 ITEAEFKNYFDQFGT 144
>TAIR9_protein||AT5G47620.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 432
Score = 143 bits (360), Expect = 1e-034
Identities = 76/137 (55%), Positives = 98/137 (71%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME + K+FIGGISW+T E++L++YF ++GEV+EAVIM+DRATGRARGFGFVVFADP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GGSAHAKQNWGCTWFSWSWTHEKDLCWGVLASTVTEN 54
+RVV KH+ID + VEAKK ++ S ++ K + G LAS+VTE
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 53 DFKTYFDQFGTVTDVVV 3
+FK YF QFG +TDVVV
Sbjct: 121 EFKKYFAQFGMITDVVV 137
>TAIR9_protein||AT5G47620.2 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 432
Score = 143 bits (360), Expect = 1e-034
Identities = 76/137 (55%), Positives = 98/137 (71%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME + K+FIGGISW+T E++L++YF ++GEV+EAVIM+DRATGRARGFGFVVFADP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GGSAHAKQNWGCTWFSWSWTHEKDLCWGVLASTVTEN 54
+RVV KH+ID + VEAKK ++ S ++ K + G LAS+VTE
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 53 DFKTYFDQFGTVTDVVV 3
+FK YF QFG +TDVVV
Sbjct: 121 EFKKYFAQFGMITDVVV 137
>TAIR9_protein||AT2G33410.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr2:14156085-14157435
FORWARD
Length = 405
Score = 132 bits (332), Expect = 2e-031
Identities = 67/142 (47%), Positives = 94/142 (66%), Gaps = 12/142 (8%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME D GK+FIGGISWDTDE L+EYF N+GEV++ +MR++ATGR RGFGFV F+DPAV
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS--------*GGSAHAKQNWGCTWFSWSWTHEKDLCWGV 78
DRV++DKH ID+R V+ K+ S G+ +A +N+ S + K + G
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFD----SGANVRTKKIFVGG 116
Query: 77 LASTVTENDFKTYFDQFGTVTD 12
L +T ++F+ YF+ +G V+D
Sbjct: 117 LPPALTSDEFRAYFETYGPVSD 138
>TAIR9_protein||AT4G14300.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr4:8231179-8232785
FORWARD
Length = 412
Score = 131 bits (327), Expect = 6e-031
Identities = 63/142 (44%), Positives = 97/142 (68%), Gaps = 12/142 (8%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
M+ D GK+F+GGISW+TDE++L+E+F NYGEV +A++MRD+ TGR RGFGFV+F+DP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS--------*GGSAHAKQNWGCTWFSWSWTHEKDLCWGV 78
DRV+++KH ID+R V+ K+ S G+ + ++ G ++ K + G
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSG----GDAYNKTKKIFVGG 116
Query: 77 LASTVTENDFKTYFDQFGTVTD 12
L T+T+ +F+ YF+ +G VTD
Sbjct: 117 LPPTLTDEEFRQYFEVYGPVTD 138
>TAIR9_protein||AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:6067394-6069098 REVERSE
Length = 370
Score = 95 bits (234), Expect = 4e-020
Identities = 41/74 (55%), Positives = 56/74 (75%)
Frame = -3
Query: 398 GKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVK 219
GK+F+GG+SW+T E YF +GEVV++VIM DR TG RGFGFV FAD AVA++V++
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 218 DKHMIDSRTVEAKK 177
+ H+ID R V+ K+
Sbjct: 126 EDHVIDDRKVDLKR 139
>TAIR9_protein||AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256014 FORWARD
Length = 232
Score = 90 bits (222), Expect = 1e-018
Identities = 39/74 (52%), Positives = 55/74 (74%)
Frame = -3
Query: 398 GKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVK 219
GKIFIGG+ DT ++F YGE+ ++VIMRDR TG+ RGFGF+ FADP+V D+V++
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 218 DKHMIDSRTVEAKK 177
D H+I+ + VE K+
Sbjct: 79 DTHVINGKQVEIKR 92
>TAIR9_protein||AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256621 FORWARD
Length = 359
Score = 90 bits (222), Expect = 1e-018
Identities = 39/74 (52%), Positives = 55/74 (74%)
Frame = -3
Query: 398 GKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVK 219
GKIFIGG+ DT ++F YGE+ ++VIMRDR TG+ RGFGF+ FADP+V D+V++
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 218 DKHMIDSRTVEAKK 177
D H+I+ + VE K+
Sbjct: 79 DTHVINGKQVEIKR 92
Score = 70 bits (169), Expect = 1e-012
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
KIF+GGI E++LK++F YG VVE ++RD T R+RGFGFV+F V D ++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 215 KHMID--SRTVEAKK 177
+MID VE KK
Sbjct: 170 GNMIDMADTQVEIKK 184
>TAIR9_protein||AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16225483-16227423 FORWARD
Length = 424
Score = 84 bits (206), Expect = 7e-017
Identities = 35/74 (47%), Positives = 55/74 (74%)
Frame = -3
Query: 398 GKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVK 219
GKIF+GG++ +T + ++F YGE+ ++VIM+DR TG+ RGFGFV +AD +V D+V++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 218 DKHMIDSRTVEAKK 177
D H+I + VE K+
Sbjct: 102 DNHIIIGKQVEIKR 115
>TAIR9_protein||AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding / single-stranded RNA
binding | chr1:21727374-21728539 FORWARD
Length = 361
Score = 78 bits (191), Expect = 4e-015
Identities = 35/79 (44%), Positives = 54/79 (68%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
M+ D K+F+GGI+ +T EE LK+YF YG V+EAV+ +++ TG+ RGFGFV FA+
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 233 DRVVKDKHMIDSRTVEAKK 177
+ ++D H I + V+ +K
Sbjct: 61 VKALRDTHFILGKPVDVRK 79
>TAIR9_protein||AT1G22330.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr1:7886693-7889241 FORWARD
Length = 292
Score = 75 bits (184), Expect = 2e-014
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+F+GG++W+T ++++ YF +GE++EAVI+ D+ATG+++G+GFV F D A R V D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 215 KH-MIDSR 195
+ +ID R
Sbjct: 78 PNPVIDGR 85
>TAIR9_protein||AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr2:19229516-19231043 FORWARD
Length = 337
Score = 75 bits (182), Expect = 4e-014
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = -3
Query: 401 LGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVV 222
L KIF+GG++W+T + ++ YF+ +GE+VEAV++ D+ TGR++G+GFV F + A R
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRAC 80
Query: 221 KDKH-MIDSRTVEAKKGC 171
++ + +ID R C
Sbjct: 81 QNMNPVIDGRRANCNLAC 98
>TAIR9_protein||AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144632-12146040 FORWARD
Length = 246
Score = 74 bits (180), Expect = 7e-014
Identities = 29/68 (42%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+F+GG++W+T + L+ YF+ +G++VEAV++ D+++GR++G+GFV F DP A + D
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 215 -KHMIDSR 195
+ID R
Sbjct: 68 PAPVIDGR 75
>TAIR9_protein||AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144632-12146040 FORWARD
Length = 245
Score = 74 bits (180), Expect = 7e-014
Identities = 29/68 (42%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+F+GG++W+T + L+ YF+ +G++VEAV++ D+++GR++G+GFV F DP A + D
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 215 -KHMIDSR 195
+ID R
Sbjct: 68 PAPVIDGR 75
>TAIR9_protein||AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427349-17429589 FORWARD
Length = 380
Score = 73 bits (177), Expect = 2e-013
Identities = 29/72 (40%), Positives = 48/72 (66%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+ + GI WD D + LK+Y +G++ + ++M+DR+TGR+RGFG+V FA A +K
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 215 KHMIDSRTVEAK 180
+H + +R +E K
Sbjct: 64 EHFLGNRILEVK 75
>TAIR9_protein||AT4G36960.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427349-17429589 FORWARD
Length = 380
Score = 73 bits (177), Expect = 2e-013
Identities = 29/72 (40%), Positives = 48/72 (66%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+ + GI WD D + LK+Y +G++ + ++M+DR+TGR+RGFG+V FA A +K
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 215 KHMIDSRTVEAK 180
+H + +R +E K
Sbjct: 64 EHFLGNRILEVK 75
>TAIR9_protein||AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29447317-29450181 FORWARD
Length = 288
Score = 72 bits (176), Expect = 2e-013
Identities = 29/68 (42%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+F+GG++W+T ++++ YF+ +GE++EAVI+ D+ TG+++G+GFV F + A R V D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 215 KH-MIDSR 195
+ +ID R
Sbjct: 78 PNPVIDGR 85
>TAIR9_protein||AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29447317-29449246 FORWARD
Length = 272
Score = 72 bits (176), Expect = 2e-013
Identities = 29/68 (42%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+F+GG++W+T ++++ YF+ +GE++EAVI+ D+ TG+++G+GFV F + A R V D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 215 KH-MIDSR 195
+ +ID R
Sbjct: 78 PNPVIDGR 85
>TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 72 bits (174), Expect = 4e-013
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+F+GG+SW TD+ LK+ F ++GEV EA ++ DR TGR+RGFGFV F+ A+ +K+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
>TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 72 bits (174), Expect = 4e-013
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
K+F+GG+SW TD+ LK+ F ++GEV EA ++ DR TGR+RGFGFV F+ A+ +K+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
>TAIR9_protein||AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 293
Score = 70 bits (171), Expect = 8e-013
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
+IF+GG+SWD E QL+ F YG++ E IM R TGR RGFGF+ F D AD +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 215 KH 210
H
Sbjct: 73 MH 74
>TAIR9_protein||AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 293
Score = 70 bits (171), Expect = 8e-013
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -3
Query: 395 KIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVVKD 216
+IF+GG+SWD E QL+ F YG++ E IM R TGR RGFGF+ F D AD +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 215 KH 210
H
Sbjct: 73 MH 74
>TAIR9_protein||AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20273863-20275827 REVERSE
Length = 262
Score = 70 bits (169), Expect = 1e-012
Identities = 28/62 (45%), Positives = 45/62 (72%)
Frame = -3
Query: 401 LGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVADRVV 222
L K+F+GG++WDT +E + ++F YG+++EAVI+ D+ T R++G+GFV F D A R
Sbjct: 16 LTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
Query: 221 KD 216
+D
Sbjct: 76 ED 77
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,794,225
Number of Sequences: 33410
Number of Extensions: 182794225
Number of Successful Extensions: 15261447
Number of sequences better than 0.0: 0
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