BLASTX 7.6.2
Query= RU00546 /QuerySize=223
(222 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin rem... 115 8e-027
TAIR9_protein||AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-R... 60 2e-010
TAIR9_protein||AT5G18620.1 | Symbols: CHR17 | CHR17 (CHROMATIN R... 60 3e-010
TAIR9_protein||AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN R... 60 3e-010
TAIR9_protein||AT5G19310.1 | Symbols: | homeotic gene regulator... 50 2e-007
TAIR9_protein||AT3G06010.1 | Symbols: ATCHR12 | ATCHR12; ATP bin... 49 7e-007
TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REM... 47 3e-006
>TAIR9_protein||AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin remodeling 5); ATP
binding / DNA binding / chromatin binding / helicase/ nucleic acid
binding | chr2:5544601-5555543 REVERSE
Length = 1725
Score = 115 bits (286), Expect = 8e-027
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 3 MSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADH 161
MSPLQKQYYKWILERNFH+LNKGVRGNQVSLLNIVVELKKCCNHPFLFESADH
Sbjct: 867 MSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADH 919
>TAIR9_protein||AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-REMODELING
PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/
helicase/ hydrolase, acting on acid anhydrides, in
phosphorus-containing anhydrides / nucleic acid binding / nucleosome
binding | chr3:1941066-1946700 FORWARD
Length = 1056
Score = 60 bits (145), Expect = 2e-010
Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 MSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD 158
MS +QKQYYK +L+++ +N G G + LLNI ++L+KCCNHP+LF+ A+
Sbjct: 425 MSQMQKQYYKALLQKDLEAVNAG--GERKRLLNIAMQLRKCCNHPYLFQGAE 474
>TAIR9_protein||AT5G18620.1 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING
FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/
hydrolase, acting on acid anhydrides, in phosphorus-containing
anhydrides / nucleic acid binding / nucleosome binding |
chr5:6196190-6202058 REVERSE
Length = 1070
Score = 60 bits (143), Expect = 3e-010
Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 MSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD 158
MS +QKQYYK +L+++ +N G G + LLNI ++L+KCCNHP+LF+ A+
Sbjct: 430 MSQMQKQYYKALLQKDLEVVNGG--GERKRLLNIAMQLRKCCNHPYLFQGAE 479
>TAIR9_protein||AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING
FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/
hydrolase, acting on acid anhydrides, in phosphorus-containing
anhydrides / nucleic acid binding / nucleosome binding |
chr5:6196190-6202058 REVERSE
Length = 1073
Score = 60 bits (143), Expect = 3e-010
Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 MSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD 158
MS +QKQYYK +L+++ +N G G + LLNI ++L+KCCNHP+LF+ A+
Sbjct: 430 MSQMQKQYYKALLQKDLEVVNGG--GERKRLLNIAMQLRKCCNHPYLFQGAE 479
>TAIR9_protein||AT5G19310.1 | Symbols: | homeotic gene regulator, putative |
chr5:6498906-6503432 FORWARD
Length = 1065
Score = 50 bits (119), Expect = 2e-007
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 MSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADH 161
MS QK YYK + + L+ G G SL N+ ++L+KCCNHP+LF AD+
Sbjct: 631 MSAWQKLYYKQVTDVGRVGLHSG-NGKSKSLQNLTMQLRKCCNHPYLFVGADY 682
>TAIR9_protein||AT3G06010.1 | Symbols: ATCHR12 | ATCHR12; ATP binding / DNA
binding / helicase/ nucleic acid binding | chr3:1802435-1807284
REVERSE
Length = 1133
Score = 49 bits (114), Expect = 7e-007
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 MSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADH 161
MS QK YYK + + L G G SL N+ ++L+KCCNHP+LF D+
Sbjct: 679 MSAWQKVYYKQVTDMGRVGLQTG-SGKSKSLQNLTMQLRKCCNHPYLFVGGDY 730
>TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/ nucleic acid
binding / protein binding / zinc ion binding | chr5:18083659-18092162
REVERSE
Length = 2243
Score = 47 bits (109), Expect = 3e-006
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = +3
Query: 12 LQKQYYKWILERNF---HNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD 158
+Q +YY+ +L +N+ N+ KGV Q S+LNIV++L+K CNHP+L +
Sbjct: 937 IQAEYYRAMLTKNYQILRNIGKGVA--QQSMLNIVMQLRKVCNHPYLIPGTE 986
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,797,682
Number of Sequences: 33410
Number of Extensions: 242797682
Number of Successful Extensions: 20492288
Number of sequences better than 0.0: 0
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