BLASTX 7.6.2
Query= RU01210 /QuerySize=722
(721 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G04800.1 | Symbols: | 40S ribosomal protein S... 226 2e-059
TAIR9_protein||AT5G04800.2 | Symbols: | 40S ribosomal protein S... 226 2e-059
TAIR9_protein||AT5G04800.3 | Symbols: | 40S ribosomal protein S... 226 2e-059
TAIR9_protein||AT5G04800.4 | Symbols: | 40S ribosomal protein S... 226 2e-059
TAIR9_protein||AT3G10610.1 | Symbols: | 40S ribosomal protein S... 225 4e-059
TAIR9_protein||AT2G04390.1 | Symbols: | 40S ribosomal protein S... 221 5e-058
TAIR9_protein||AT2G05220.1 | Symbols: | 40S ribosomal protein S... 219 2e-057
TAIR9_protein||AT2G05220.2 | Symbols: | 40S ribosomal protein S... 219 2e-057
>TAIR9_protein||AT5G04800.1 | Symbols: | 40S ribosomal protein S17 (RPS17D) |
chr5:1389217-1389642 FORWARD
Length = 142
Score = 226 bits (574), Expect = 2e-059
Identities = 114/142 (80%), Positives = 127/142 (89%), Gaps = 1/142 (0%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+ D+IKVDKETL+ML++LGMS+ PG+S
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 449 EP-QVVVPSQGYGRGPQGRRF* 511
EP Q + P +G G RR+*
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY* 142
>TAIR9_protein||AT5G04800.2 | Symbols: | 40S ribosomal protein S17 (RPS17D) |
chr5:1389217-1389642 FORWARD
Length = 142
Score = 226 bits (574), Expect = 2e-059
Identities = 114/142 (80%), Positives = 127/142 (89%), Gaps = 1/142 (0%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+ D+IKVDKETL+ML++LGMS+ PG+S
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 449 EP-QVVVPSQGYGRGPQGRRF* 511
EP Q + P +G G RR+*
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY* 142
>TAIR9_protein||AT5G04800.3 | Symbols: | 40S ribosomal protein S17 (RPS17D) |
chr5:1389217-1389642 FORWARD
Length = 142
Score = 226 bits (574), Expect = 2e-059
Identities = 114/142 (80%), Positives = 127/142 (89%), Gaps = 1/142 (0%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+ D+IKVDKETL+ML++LGMS+ PG+S
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 449 EP-QVVVPSQGYGRGPQGRRF* 511
EP Q + P +G G RR+*
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY* 142
>TAIR9_protein||AT5G04800.4 | Symbols: | 40S ribosomal protein S17 (RPS17D) |
chr5:1389217-1389642 FORWARD
Length = 142
Score = 226 bits (574), Expect = 2e-059
Identities = 114/142 (80%), Positives = 127/142 (89%), Gaps = 1/142 (0%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+ D+IKVDKETL+ML++LGMS+ PG+S
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 449 EP-QVVVPSQGYGRGPQGRRF* 511
EP Q + P +G G RR+*
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY* 142
>TAIR9_protein||AT3G10610.1 | Symbols: | 40S ribosomal protein S17 (RPS17C) |
chr3:3319459-3319881 FORWARD
Length = 141
Score = 225 bits (571), Expect = 4e-059
Identities = 114/138 (82%), Positives = 127/138 (92%), Gaps = 1/138 (0%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+IDD+KVDKETL+ML++LGMS+I G+S+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120
Query: 449 EPQVVVPSQGYGRGPQGR 502
E Q + +GR P GR
Sbjct: 121 ETQQAMAPAVFGR-PAGR 137
>TAIR9_protein||AT2G04390.1 | Symbols: | 40S ribosomal protein S17 (RPS17A) |
chr2:1527911-1528336 FORWARD
Length = 142
Score = 221 bits (561), Expect = 5e-058
Identities = 112/142 (78%), Positives = 126/142 (88%), Gaps = 1/142 (0%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+ D+IKVDKETL+ML++LGMS+ G+S
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120
Query: 449 EP-QVVVPSQGYGRGPQGRRF* 511
+P Q + P +G G RR+*
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY* 142
>TAIR9_protein||AT2G05220.1 | Symbols: | 40S ribosomal protein S17 (RPS17B) |
chr2:1894757-1895179 REVERSE
Length = 141
Score = 219 bits (556), Expect = 2e-057
Identities = 113/142 (79%), Positives = 126/142 (88%), Gaps = 2/142 (1%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+ D+IKVDKETL+ML++LGMS+ G+S
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120
Query: 449 EP-QVVVPSQGYGRGPQGRRF* 511
EP Q + P +G G RR+*
Sbjct: 121 EPQQAMAPIAAFG-GRAPRRY* 141
>TAIR9_protein||AT2G05220.2 | Symbols: | 40S ribosomal protein S17 (RPS17B) |
chr2:1894757-1895179 REVERSE
Length = 141
Score = 219 bits (556), Expect = 2e-057
Identities = 113/142 (79%), Positives = 126/142 (88%), Gaps = 2/142 (1%)
Frame = +2
Query: 89 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 268
MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 269 IQKGPVRGISLKLQEEERERRMDFVPEESAIRIDDIKVDKETLDMLSALGMSEIPGVSEA 448
IQKGPVRGISLKLQEEERERRMDFVP+ESAI+ D+IKVDKETL+ML++LGMS+ G+S
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120
Query: 449 EP-QVVVPSQGYGRGPQGRRF* 511
EP Q + P +G G RR+*
Sbjct: 121 EPQQAMAPIAAFG-GRAPRRY* 141
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,328,727
Number of Sequences: 33410
Number of Extensions: 450328727
Number of Successful Extensions: 25624131
Number of sequences better than 0.0: 0
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