BLASTX 7.6.2
Query= RU01631 /QuerySize=829
(828 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G34480.1 | Symbols: | 60S ribosomal protein L... 185 4e-047
TAIR9_protein||AT1G29965.1 | Symbols: | 60S ribosomal protein L... 183 2e-046
TAIR9_protein||AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIB... 181 8e-046
TAIR9_protein||AT3G14600.1 | Symbols: | 60S ribosomal protein L... 180 1e-045
>TAIR9_protein||AT2G34480.1 | Symbols: | 60S ribosomal protein L18A (RPL18aB) |
chr2:14532916-14534161 REVERSE
Length = 179
Score = 185 bits (468), Expect = 4e-047
Identities = 88/124 (70%), Positives = 97/124 (78%)
Frame = +3
Query: 81 MVALKFHQHQVVGRDLPKDAEDTPKIYRMKLWHTNEVRAXXXXXXXXXXXXXXXXXNGQM 260
M A +FHQ+QVVGR LP + + PKIYRMKLW TNEVRA NGQM
Sbjct: 1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 261 LAINEIFEKKPTVVENYGIWLRYQSRTGYHNMYKEYRDTTLNGAVDQMYTEMASRHRVRF 440
LAINEI+EK PT ++N+GIWLRYQSRTGYHNMYKEYRDTTLNGAV+QMYTEMASRHRVRF
Sbjct: 61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 441 PCIQ 452
PCIQ
Sbjct: 121 PCIQ 124
Score = 103 bits (256), Expect = 2e-022
Identities = 47/55 (85%), Positives = 53/55 (96%)
Frame = +2
Query: 452 IIKTATIPAKLCKRESTKQFHNSKIKFPLISRKVRPPTRKLKTTYKASRPNLFV* 616
IIKTAT+PAKLCKRESTKQFHNSKIKFPL+ RKVRPP+RKLKTTYKA++PNLF+*
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM* 179
>TAIR9_protein||AT1G29965.1 | Symbols: | 60S ribosomal protein L18A (RPL18aA)
| chr1:10498458-10499373 REVERSE
Length = 179
Score = 183 bits (462), Expect = 2e-046
Identities = 86/124 (69%), Positives = 96/124 (77%)
Frame = +3
Query: 81 MVALKFHQHQVVGRDLPKDAEDTPKIYRMKLWHTNEVRAXXXXXXXXXXXXXXXXXNGQM 260
M ++ HQ+QVVGR LP + ++ PKIYRMKLW TNEV A NGQM
Sbjct: 1 MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60
Query: 261 LAINEIFEKKPTVVENYGIWLRYQSRTGYHNMYKEYRDTTLNGAVDQMYTEMASRHRVRF 440
LAINEIFEK PT ++N+GIWLRYQSRTGYHNMYKEYRDTTLNGAV+QMYTEMASRHRVRF
Sbjct: 61 LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 441 PCIQ 452
PCIQ
Sbjct: 121 PCIQ 124
Score = 101 bits (251), Expect = 6e-022
Identities = 46/55 (83%), Positives = 52/55 (94%)
Frame = +2
Query: 452 IIKTATIPAKLCKRESTKQFHNSKIKFPLISRKVRPPTRKLKTTYKASRPNLFV* 616
IIKTAT+PA LCKRESTKQFHNSKIKFPL+ RKVRPPTRKLKTT+KA++PNLF+*
Sbjct: 125 IIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM* 179
>TAIR9_protein||AT1G29970.2 | Symbols: RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN
L18A-1); structural constituent of ribosome | chr1:10498458-10501311
REVERSE
Length = 313
Score = 181 bits (457), Expect = 8e-046
Identities = 85/122 (69%), Positives = 95/122 (77%)
Frame = +3
Query: 87 ALKFHQHQVVGRDLPKDAEDTPKIYRMKLWHTNEVRAXXXXXXXXXXXXXXXXXNGQMLA 266
++ HQ+QVVGR LP + ++ PKIYRMKLW TNEV A NGQMLA
Sbjct: 137 SIALHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLA 196
Query: 267 INEIFEKKPTVVENYGIWLRYQSRTGYHNMYKEYRDTTLNGAVDQMYTEMASRHRVRFPC 446
INEIFEK PT ++N+GIWLRYQSRTGYHNMYKEYRDTTLNGAV+QMYTEMASRHRVRFPC
Sbjct: 197 INEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPC 256
Query: 447 IQ 452
IQ
Sbjct: 257 IQ 258
Score = 101 bits (251), Expect = 6e-022
Identities = 46/55 (83%), Positives = 52/55 (94%)
Frame = +2
Query: 452 IIKTATIPAKLCKRESTKQFHNSKIKFPLISRKVRPPTRKLKTTYKASRPNLFV* 616
IIKTAT+PA LCKRESTKQFHNSKIKFPL+ RKVRPPTRKLKTT+KA++PNLF+*
Sbjct: 259 IIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM* 313
>TAIR9_protein||AT3G14600.1 | Symbols: | 60S ribosomal protein L18A (RPL18aC) |
chr3:4910773-4911933 FORWARD
Length = 179
Score = 180 bits (456), Expect = 1e-045
Identities = 86/124 (69%), Positives = 94/124 (75%)
Frame = +3
Query: 81 MVALKFHQHQVVGRDLPKDAEDTPKIYRMKLWHTNEVRAXXXXXXXXXXXXXXXXXNGQM 260
M +FHQ+QVVGR LP + ++ PKIYRMKLW NEV A NGQM
Sbjct: 1 MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60
Query: 261 LAINEIFEKKPTVVENYGIWLRYQSRTGYHNMYKEYRDTTLNGAVDQMYTEMASRHRVRF 440
LAINEIFEK PT ++NYGIWLRYQSRTGYHNMYKEYRDTTLNG V+QMYTEMASRHRVRF
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120
Query: 441 PCIQ 452
PCIQ
Sbjct: 121 PCIQ 124
Score = 102 bits (253), Expect = 3e-022
Identities = 47/55 (85%), Positives = 52/55 (94%)
Frame = +2
Query: 452 IIKTATIPAKLCKRESTKQFHNSKIKFPLISRKVRPPTRKLKTTYKASRPNLFV* 616
IIKTAT+PAKLCKRE TKQFHNSKIKFPL+ RKVRPP+RKLKTTYKAS+PNLF+*
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM* 179
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 630,063,315
Number of Sequences: 33410
Number of Extensions: 630063315
Number of Successful Extensions: 40957224
Number of sequences better than 0.0: 0
|