BLASTX 7.6.2
Query= RU01692 /QuerySize=796
(795 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G09990.1 | Symbols: | 40S ribosomal protein S... 260 1e-069
TAIR9_protein||AT5G18380.1 | Symbols: | 40S ribosomal protein S... 259 2e-069
TAIR9_protein||AT3G04230.1 | Symbols: | 40S ribosomal protein S... 247 1e-065
TAIR9_protein||AT5G18380.2 | Symbols: | 40S ribosomal protein S... 225 3e-059
>TAIR9_protein||AT2G09990.1 | Symbols: | 40S ribosomal protein S16 (RPS16A) |
chr2:3781442-3781882 FORWARD
Length = 147
Score = 260 bits (662), Expect = 1e-069
Identities = 124/143 (86%), Positives = 135/143 (94%)
Frame = -3
Query: 712 PPIKSVQCFGRKKTAVAVTYCKEGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFA 533
P +SVQCFGRKKTAVAVT+CK G GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFA
Sbjct: 5 PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFA 64
Query: 532 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVADP 353
GV+MRIRV GGGHTSQ+YAIRQSIAKALVAYYQK+VDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65 GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124
Query: 352 RRCEPKKFGGRGARARFQKSYR* 284
RRCEPKKFGGRGAR+R+QKSYR*
Sbjct: 125 RRCEPKKFGGRGARSRYQKSYR* 147
>TAIR9_protein||AT5G18380.1 | Symbols: | 40S ribosomal protein S16 (RPS16C) |
chr5:6090253-6090693 REVERSE
Length = 147
Score = 259 bits (661), Expect = 2e-069
Identities = 123/143 (86%), Positives = 135/143 (94%)
Frame = -3
Query: 712 PPIKSVQCFGRKKTAVAVTYCKEGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFA 533
P +SVQCFGRKKTAVAVT+CK G GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFA
Sbjct: 5 PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFA 64
Query: 532 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVADP 353
GV+MRIRV GGGHTSQ+YAIRQSIAKALVAYYQK+VDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65 GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124
Query: 352 RRCEPKKFGGRGARARFQKSYR* 284
RRCEPKKFGGRGAR+R+QKSYR*
Sbjct: 125 RRCEPKKFGGRGARSRYQKSYR* 147
>TAIR9_protein||AT3G04230.1 | Symbols: | 40S ribosomal protein S16 (RPS16B) |
chr3:1113169-1113609 REVERSE
Length = 147
Score = 247 bits (628), Expect = 1e-065
Identities = 121/147 (82%), Positives = 132/147 (89%), Gaps = 1/147 (0%)
Frame = -3
Query: 721 MAAPPIK-SVQCFGRKKTAVAVTYCKEGRGLIKINGCPIELVEPEILRFKAYEPILLLGR 545
MA P K SVQCFGRKKTA AVTYCK G G+IK+NG PIEL +PEILRFK +EP+LLLG+
Sbjct: 1 MATQPAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGK 60
Query: 544 HRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLL 365
HRFAGVDMRIR GGG+TS++YAIRQSIAKALVAYYQK+VDEQSKKEIKDIL+RYDRTLL
Sbjct: 61 HRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLL 120
Query: 364 VADPRRCEPKKFGGRGARARFQKSYR* 284
VADPRRCE KKFGG GARARFQKSYR*
Sbjct: 121 VADPRRCESKKFGGPGARARFQKSYR* 147
>TAIR9_protein||AT5G18380.2 | Symbols: | 40S ribosomal protein S16 (RPS16C) |
chr5:6090128-6090693 REVERSE
Length = 145
Score = 225 bits (572), Expect = 3e-059
Identities = 108/128 (84%), Positives = 119/128 (92%)
Frame = -3
Query: 712 PPIKSVQCFGRKKTAVAVTYCKEGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFA 533
P +SVQCFGRKKTAVAVT+CK G GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFA
Sbjct: 5 PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFA 64
Query: 532 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVADP 353
GV+MRIRV GGGHTSQ+YAIRQSIAKALVAYYQK+VDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65 GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124
Query: 352 RRCEPKKF 329
RRCE +F
Sbjct: 125 RRCELFRF 132
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,320,079
Number of Sequences: 33410
Number of Extensions: 659320079
Number of Successful Extensions: 41063224
Number of sequences better than 0.0: 0
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