BLASTX 7.6.2
Query= RU02088 /QuerySize=769
(768 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G19730.1 | Symbols: | 60S ribosomal protein L... 137 9e-033
TAIR9_protein||AT2G19730.2 | Symbols: | 60S ribosomal protein L... 137 9e-033
TAIR9_protein||AT2G19730.3 | Symbols: | 60S ribosomal protein L... 137 9e-033
TAIR9_protein||AT4G29410.1 | Symbols: | 60S ribosomal protein L... 131 8e-031
TAIR9_protein||AT4G29410.2 | Symbols: | 60S ribosomal protein L... 131 8e-031
>TAIR9_protein||AT2G19730.1 | Symbols: | 60S ribosomal protein L28 (RPL28A) |
chr2:8511752-8512995 FORWARD
Length = 144
Score = 137 bits (344), Expect = 9e-033
Identities = 67/91 (73%), Positives = 80/91 (87%)
Frame = -1
Query: 534 NKKTVNIQPGGKDQSVVLATTKTRKQNKPASLVHKSVMRKEFPRMAKAVTNQVVDNFYRP 355
NKKTV IQ KDQ+VVLATTKT+KQNKP V+KS+++KEFPRM+KAV NQVVDN+YRP
Sbjct: 53 NKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRP 112
Query: 354 DLKKAALARLSVVYRSLKVSKSGAKKRNRQA 262
DLKKAALARLS + + L+V+KSGAK+RNRQA
Sbjct: 113 DLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
Score = 84 bits (207), Expect = 7e-017
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -2
Query: 689 MATVPGQLIWEIVKKNNSFLVKQFGRSHAGVRFSKEPNNLCNLHSYKHS 543
MATVPGQLIWEIVK NN FLVKQFGR ++ V+FSKE NNL N+HSYKHS
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHS 49
>TAIR9_protein||AT2G19730.2 | Symbols: | 60S ribosomal protein L28 (RPL28A) |
chr2:8511752-8512995 FORWARD
Length = 144
Score = 137 bits (344), Expect = 9e-033
Identities = 67/91 (73%), Positives = 80/91 (87%)
Frame = -1
Query: 534 NKKTVNIQPGGKDQSVVLATTKTRKQNKPASLVHKSVMRKEFPRMAKAVTNQVVDNFYRP 355
NKKTV IQ KDQ+VVLATTKT+KQNKP V+KS+++KEFPRM+KAV NQVVDN+YRP
Sbjct: 53 NKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRP 112
Query: 354 DLKKAALARLSVVYRSLKVSKSGAKKRNRQA 262
DLKKAALARLS + + L+V+KSGAK+RNRQA
Sbjct: 113 DLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
Score = 84 bits (207), Expect = 7e-017
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -2
Query: 689 MATVPGQLIWEIVKKNNSFLVKQFGRSHAGVRFSKEPNNLCNLHSYKHS 543
MATVPGQLIWEIVK NN FLVKQFGR ++ V+FSKE NNL N+HSYKHS
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHS 49
>TAIR9_protein||AT2G19730.3 | Symbols: | 60S ribosomal protein L28 (RPL28A) |
chr2:8511752-8512995 FORWARD
Length = 144
Score = 137 bits (344), Expect = 9e-033
Identities = 67/91 (73%), Positives = 80/91 (87%)
Frame = -1
Query: 534 NKKTVNIQPGGKDQSVVLATTKTRKQNKPASLVHKSVMRKEFPRMAKAVTNQVVDNFYRP 355
NKKTV IQ KDQ+VVLATTKT+KQNKP V+KS+++KEFPRM+KAV NQVVDN+YRP
Sbjct: 53 NKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRP 112
Query: 354 DLKKAALARLSVVYRSLKVSKSGAKKRNRQA 262
DLKKAALARLS + + L+V+KSGAK+RNRQA
Sbjct: 113 DLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
Score = 84 bits (207), Expect = 7e-017
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -2
Query: 689 MATVPGQLIWEIVKKNNSFLVKQFGRSHAGVRFSKEPNNLCNLHSYKHS 543
MATVPGQLIWEIVK NN FLVKQFGR ++ V+FSKE NNL N+HSYKHS
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHS 49
>TAIR9_protein||AT4G29410.1 | Symbols: | 60S ribosomal protein L28 (RPL28C) |
chr4:14468439-14469964 REVERSE
Length = 144
Score = 131 bits (327), Expect = 8e-031
Identities = 63/91 (69%), Positives = 76/91 (83%)
Frame = -1
Query: 534 NKKTVNIQPGGKDQSVVLATTKTRKQNKPASLVHKSVMRKEFPRMAKAVTNQVVDNFYRP 355
NKKTV IQ GKDQ VVL TTKT++QNKP V+KS+++KEF RM+K V NQVVDN+YRP
Sbjct: 53 NKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRP 112
Query: 354 DLKKAALARLSVVYRSLKVSKSGAKKRNRQA 262
DLKKAALARLS + + L+V+KSG K+RNRQA
Sbjct: 113 DLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
Score = 84 bits (206), Expect = 9e-017
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -2
Query: 689 MATVPGQLIWEIVKKNNSFLVKQFGRSHAGVRFSKEPNNLCNLHSYKHS 543
MATVPGQLIWEIVK+NN FLVKQFGR +A V+FSKE NNL N++SYKHS
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHS 49
>TAIR9_protein||AT4G29410.2 | Symbols: | 60S ribosomal protein L28 (RPL28C) |
chr4:14468439-14469964 REVERSE
Length = 144
Score = 131 bits (327), Expect = 8e-031
Identities = 63/91 (69%), Positives = 76/91 (83%)
Frame = -1
Query: 534 NKKTVNIQPGGKDQSVVLATTKTRKQNKPASLVHKSVMRKEFPRMAKAVTNQVVDNFYRP 355
NKKTV IQ GKDQ VVL TTKT++QNKP V+KS+++KEF RM+K V NQVVDN+YRP
Sbjct: 53 NKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRP 112
Query: 354 DLKKAALARLSVVYRSLKVSKSGAKKRNRQA 262
DLKKAALARLS + + L+V+KSG K+RNRQA
Sbjct: 113 DLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
Score = 84 bits (206), Expect = 9e-017
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -2
Query: 689 MATVPGQLIWEIVKKNNSFLVKQFGRSHAGVRFSKEPNNLCNLHSYKHS 543
MATVPGQLIWEIVK+NN FLVKQFGR +A V+FSKE NNL N++SYKHS
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHS 49
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 747,274,820
Number of Sequences: 33410
Number of Extensions: 747274820
Number of Successful Extensions: 41161775
Number of sequences better than 0.0: 0
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