BLASTX 7.6.2
Query= RU02186 /QuerySize=1803
(1802 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 711 6e-205
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 679 2e-195
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 611 5e-175
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 508 7e-144
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 488 8e-138
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 356 5e-098
TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDI... 332 7e-091
TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDI... 315 9e-086
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 711 bits (1833), Expect = 6e-205
Identities = 372/558 (66%), Positives = 423/558 (75%), Gaps = 15/558 (2%)
Frame = +3
Query: 120 TTSLYVGDLDQNITDSQLYDLFNQLGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 299
TTSLYVGDLD +TDSQL++ F Q GQVVSVRVCRD++TRRSLGYGYVNY+ PQDA+RAL
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 300 DVLNFTPVNGRPIRIMYSHRDPSIRKSGSGNIFIKNLDKALDHKALHDTFSSFGNILSCK 479
+ LNF +NGR IR+MYS RDPS+RKSG GNIFIKNLDK++DHKALH+TFS+FG ILSCK
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 480 VATDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQEREGVADKSKF 659
VA D SGQSKGYGFVQ+D +EAAQ AI KLNGML+NDKQV+VGPF+ K +R+ +K KF
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKF 223
Query: 660 QNVYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAVEA 839
NVYVKNLSES ++++ K+FGEFG TS VIMRD +GKSK FGFVNF+N DDAARAV+A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 840 LNGKKFDDKEWYVGKAQKKSERENELKLRFEQSMKEAADKYQGANLYVKNLDDSIVDDKL 1019
LNGK FDDKEW+VGKAQKKSERE ELK +FEQS+KEAADK QG+NLYVKNLD+S+ DDKL
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 1020 KELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVALAQ 1199
+E F PFGTITSCKVMRDP+GVSRGSGFVAFSTPEEA RA+ EMNGKMIV+KPLYVALAQ
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Query: 1200 RKEDRRARLQAQFSQMRPVAMAPSVAXXXXXXXXXXXXXXXXXXXXQAPPAIIPSQPGFG 1379
RKEDR+ARLQAQFSQMRPV M P+V Q PPA+IP QPGFG
Sbjct: 404 RKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIP-QPGFG 462
Query: 1380 YQQQLVPGMRPGGAPMPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXX 1538
YQQQLVPGMRPGG+PMPNFF+PM+
Sbjct: 463 YQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPSPMMQQ 522
Query: 1539 XXXXRGRIYRYPSGRALPDGPMPG-VGGMFSVPYDLS---GMPLRDPALSQPVPIGTLAS 1706
RGR+YRYP MPG M SVPYD+S G+ RD SQPVPI LA+
Sbjct: 523 QMHPRGRMYRYPQRDV---NTMPGPTQNMLSVPYDVSSGGGVHHRDSPTSQPVPIVALAT 579
Query: 1707 ALANATPEQQRTMLGETL 1760
LANA PEQQRTMLGE L
Sbjct: 580 RLANAAPEQQRTMLGENL 597
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 679 bits (1750), Expect = 2e-195
Identities = 333/490 (67%), Positives = 395/490 (80%), Gaps = 1/490 (0%)
Frame = +3
Query: 114 FVTTSLYVGDLDQNITDSQLYDLFNQLGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAAR 293
F TSLYVGDLD N+TDSQL+D F Q+G VV+VRVCRDL TRRSLGYGYVN++NPQDAAR
Sbjct: 33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAAR 92
Query: 294 ALDVLNFTPVNGRPIRIMYSHRDPSIRKSGSGNIFIKNLDKALDHKALHDTFSSFGNILS 473
A+ LN+ P+ G+PIR+MYSHRDPS+R+SG+GNIFIKNLD+++DHKALHDTFSSFGNI+S
Sbjct: 93 AIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 474 CKVATDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQEREGVADKS 653
CKVA DSSGQSKGYGFVQ+ NEE+AQKAI KLNGML+NDKQV+VGPFLR+QER+ A+K+
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKT 212
Query: 654 KFQNVYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAV 833
KF NVYVKNL+ESTT+DD FGE+G ITS V+M+D +GKSK FGFVNF+N DDAARAV
Sbjct: 213 KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272
Query: 834 EALNGKKFDDKEWYVGKAQKKSERENELKLRFEQSMKEAADKYQGANLYVKNLDDSIVDD 1013
E+LNG KFDDKEWYVG+AQKKSERE EL++R+EQ++KEAADK+Q +NLYVKNLD SI D+
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDE 332
Query: 1014 KLKELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVAL 1193
KLKE+F+PFGT+TS KVMRDPNG S+GSGFVAF+TPEEA A+++++GKMI SKPLYVA+
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
Query: 1194 AQRKEDRRARLQAQFSQMRPVAMAPSVAXXXXXXXXXXXXXXXXXXXXQAPPAIIPSQPG 1373
AQRKEDRR RLQAQFSQ+RPVAM PSV QAPPA+IP QPG
Sbjct: 393 AQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPG 452
Query: 1374 FGYQQQLVPGMRPGGAPMPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 1553
+GYQQQLVPGMRPGG P+P+FF+PMV R
Sbjct: 453 YGYQQQLVPGMRPGGGPVPSFFMPMV-QPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPR 511
Query: 1554 GRIYRYPSGR 1583
GR++RYP GR
Sbjct: 512 GRMFRYPQGR 521
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 611 bits (1575), Expect = 5e-175
Identities = 316/517 (61%), Positives = 370/517 (71%), Gaps = 10/517 (1%)
Frame = +3
Query: 126 SLYVGDLDQNITDSQLYDLFNQLGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 305
SLYVGDLD N+TDSQLYD F ++ QVVSVRVCRD +T SLGYGYVNYSN DA +A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 306 LNFTPVNGRPIRIMYSHRDPSIRKSGSGNIFIKNLDKALDHKALHDTFSSFGNILSCKVA 485
LN++ +NG+ IRI YS RD S R+SG GN+F+KNLDK++D+K LH+ FS G I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 486 TDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQEREGVADKSKFQN 665
TD GQS+GYGFVQFD E++A+ AI KLNG ++NDKQ+FVGPFLRK+ERE ADK KF N
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 666 VYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAVEALN 845
VYVKNLSE+TT+D+ FG++G I+S V+MRD DGKS+CFGFVNF+NP+DAARAVEALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 846 GKKFDDKEWYVGKAQKKSERENELKLRFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKE 1025
GKKFDDKEWYVGKAQKKSERE EL R+EQ + +K+ G NLYVKNLDD++ D+KL+E
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 1026 LFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVALAQRK 1205
LF FGTITSCKVMRDP+G S+GSGFVAFS EA+R L EMNGKM+ KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 1206 EDRRARLQAQFSQMRPVAMAPSVAXXXXXXXXXXXXXXXXXXXXQAPPAIIPSQPGFGYQ 1385
E+RRA+LQAQFSQMRP A P V Q PP IIP QPGFGYQ
Sbjct: 407 EERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQ 465
Query: 1386 QQLVPGMRPG--GAPMPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGR 1559
QLVPGMRP G PM + RGR
Sbjct: 466 PQLVPGMRPAFFGGPM----MQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGR 521
Query: 1560 IYRYPS-GRALPDGPMPGVGGMFSVPYDLSGMPLRDP 1667
YRYPS GR +PDGPMP GGM V YD++ MP P
Sbjct: 522 GYRYPSGGRNMPDGPMP--GGMVPVAYDMNVMPYSQP 556
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 508 bits (1306), Expect = 7e-144
Identities = 287/558 (51%), Positives = 360/558 (64%), Gaps = 23/558 (4%)
Frame = +3
Query: 123 TSLYVGDLDQNITDSQLYDLFNQLGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 302
+SLY GDLD +T++ L+DLF + VVSVRVCRD RRSLGY Y+N+SNP DA RA++
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 303 VLNFTPVNGRPIRIMYSHRDPSIRKSGSGNIFIKNLDKALDHKALHDTFSSFGNILSCKV 482
LN+TP+ RPIRIM S+RDPS R SG GNIFIKNLD ++D+KAL +TFSSFG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 483 ATDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQE--REGVADKSK 656
A D +G+SKGYGFVQF+ EE+AQ AI KLNGML+NDKQVFVG F+R+QE R+ +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 657 FQNVYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAVE 836
F NVYVKNL + ED+ K FG+FG I+S V+MRDQ G S+CFGFVNF+ + AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 837 ALNGKKFDDKEWYVGKAQKKSERENELKLRFEQSMKEAADKYQGANLYVKNLDDSIVDDK 1016
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+ D+K
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 1017 LKELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVALA 1196
LKE+F+ +G +TS KVM +P G+SRG GFVA+S PEEA RAL+EMNGKMI KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 1197 QRKEDRRARLQAQFSQMRPVAMAPSVAXXXXXXXXXXXXXXXXXXXXQAPPAIIPSQP-G 1373
QRKEDRRA LQA FSQ+R A P ++ Q +++PSQP G
Sbjct: 408 QRKEDRRAHLQALFSQIR--APGP-MSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIG 464
Query: 1374 FGYQQQLVPGMRPGGAPMPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 1553
+G+Q Q +PGMRPG P NF VP
Sbjct: 465 YGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNP 523
Query: 1554 GRIYRYPSG---------RALPDGPMPGVGGMFSVPYDLSGMPLRDPALSQPVPIGTLAS 1706
RY +G ++P G +P + +P D S + + L +PI L S
Sbjct: 524 SPGMRYMNGASNGRNGMDSSVPQGILPPI---IPLPIDASSISHQKAPL---LPISKLTS 577
Query: 1707 ALANATPEQQRTMLGETL 1760
+LA+A+P + MLGE L
Sbjct: 578 SLASASPADRTRMLGEQL 595
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 488 bits (1254), Expect = 8e-138
Identities = 273/557 (49%), Positives = 354/557 (63%), Gaps = 14/557 (2%)
Frame = +3
Query: 123 TSLYVGDLDQNITDSQLYDLFNQLGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 302
+SLYVGDLD ++ +S L DLFNQ+ V ++RVCRDL T RSLGY YVN++NP+DA+RA++
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 303 VLNFTPVNGRPIRIMYSHRDPSIRKSGSGNIFIKNLDKALDHKALHDTFSSFGNILSCKV 482
LN+ P+ RPIRIM S+RDPS R SG GN+FIKNLD ++D+KAL++TFSSFG ILSCKV
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 483 ATDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQEREGVADKS--K 656
A D G+SKGYGFVQF+ EE AQ AI KLNGML+NDKQVFVG F+R+Q+R +
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Query: 657 FQNVYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAVE 836
F NVYVKNL + T+D+ K FG++G I+S V+M+DQ G S+ FGFVNF +P+ AA AVE
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 837 ALNGKKFDDKEWYVGKAQKKSERENELKLRFEQSMKEAADKYQGANLYVKNLDDSIVDDK 1016
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS+ D+K
Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 1017 LKELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVALA 1196
LKE+F+ +G +TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKMI KPLYVALA
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 1197 QRKEDRRARLQAQFSQMR-PVAMAPSVAXXXXXX----XXXXXXXXXXXXXXQAPPAIIP 1361
QRKE+R+A LQ+ F+Q+R P M+P + ++P
Sbjct: 404 QRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVP 463
Query: 1362 SQP-GFGYQQQLVPGMRPGGAPMPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1538
SQP G+GYQ Q +PGMRPG P PNF +P
Sbjct: 464 SQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQM 522
Query: 1539 XXXXRGRIYRYPSGRALPDGPMPGVGGMFSVPYDLSGMPLRDPALSQ---PVPIGTLASA 1709
R + +G G+ +P + S P S P+ I LAS
Sbjct: 523 LQQNASR-FMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASD 581
Query: 1710 LANATPEQQRTMLGETL 1760
LA A+P++ MLG+ L
Sbjct: 582 LALASPDKHPRMLGDHL 598
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 356 bits (911), Expect = 5e-098
Identities = 178/374 (47%), Positives = 259/374 (69%), Gaps = 2/374 (0%)
Frame = +3
Query: 117 VTTSLYVGDLDQNITDSQLYDLFNQLGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 296
VT SLYVGDL ++T+ LYD F + + SVR+C+D S+ RSL YGY N+ + QDA A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 297 LDVLNFTPVNGRPIRIMYSHRDPSIRKSGSGNIFIKNLDKALDHKALHDTFSSFGNILSC 476
++ N + +NG+ IR+M+S R P R++G GN+F+KNL +++ + L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 477 KVATDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQEREGVADKSK 656
KVAT G+S+GYGFVQF+ E+AA AI LN ++ DK+++VG F++K +R V + K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR--VKPEEK 199
Query: 657 FQNVYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAVE 836
+ N+Y+KNL +ED + F EFG I S+ I +D++ + + FVNFDNP+DA RA E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 837 ALNGKKFDDKEWYVGKAQKKSERENELKLRFEQSMKEAADKYQGANLYVKNLDDSIVDDK 1016
+NG KF K YVG+AQKK+ERE L+ +F++ +E + +N+YVKN++ ++ +++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 1017 LKELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVALA 1196
L++ F+ GTITS K+M D G S+G GFV FSTPEEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 1197 QRKEDRRARLQAQF 1238
Q+KEDR+ +LQ QF
Sbjct: 380 QKKEDRKMQLQVQF 393
Score = 81 bits (199), Expect = 2e-015
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +3
Query: 954 DKYQGANLYVKNLDDSIVDDKLKELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEAN 1133
+KY NLY+KNLD + +D L+E F FG I S + +D N + RG FV F PE+A
Sbjct: 198 EKY--TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDAR 255
Query: 1134 RALAEMNGKMIVSKPLYVALAQRKEDRRARLQAQFSQ 1244
RA +NG SK LYV AQ+K +R L+ QF +
Sbjct: 256 RAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKE 292
>TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1);
RNA binding / translation initiation factor | chr1:12433356-12434735
REVERSE
Length = 408
Score = 332 bits (849), Expect = 7e-091
Identities = 169/321 (52%), Positives = 232/321 (72%), Gaps = 6/321 (1%)
Frame = +3
Query: 297 LDVLNFTPVNGRPIRIMYSHRDPSIRKSGSGNIFIKNLDKALDHKALHDTFSSFGNILSC 476
++VLN+ + G+P+RIM+S RDPS R SG GN+F+KNLD+++D+K L D FS+FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 477 KVATDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQEREGVADKSK 656
KVA D+SG SKGYGFVQF ++ + A NG LI ++ + V PF+ + G DKS+
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSR----GQWDKSR 116
Query: 657 -FQNVYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAV 833
F NVYVKNL E+ T+ D ++FGEFG ITS V+M+D +GKS+ FGFVNF+ + A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 834 EALNGKKFDDKEWYVGKAQKKSERENELKLRFE-QSMKEAADKYQGANLYVKNLDDSIVD 1010
E +NG D+KE +VG+AQ+K+ R +LK +FE + + +G NLYVKNLDDS+ +
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 1011 DKLKELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVA 1190
KL+ELF+ FGTITSCKVM NG+S+G GFV FST EEA++A+ +MNGKM+ +KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 1191 LAQRKEDRRARLQAQFSQMRP 1253
LAQ KE + LQ QF+ P
Sbjct: 297 LAQCKEQHKLHLQTQFNNPPP 317
>TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6);
RNA binding / translation initiation factor | chr3:5558676-5560993
REVERSE
Length = 538
Score = 315 bits (805), Expect = 9e-086
Identities = 170/386 (44%), Positives = 249/386 (64%), Gaps = 6/386 (1%)
Frame = +3
Query: 126 SLYVGDLDQNITDSQLYDLFNQLGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 305
SLYVGDL ++T+ L D F+ VVSV +CR+ T +S+ Y Y+N+ +P A+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 306 LNFTPVNGRPIRIMYSHRDPSIR---KSGSGNIFIKNLDKALDHKALHDTFSSFGNILSC 476
LN + + G+ +RIM+S RD + R ++G N+++KNLD ++ L F FG+ILSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 477 KVATDSSGQSKGYGFVQFDNEEAAQKAIAKLNGMLINDKQVFVGPFLRKQEREGVADKSK 656
KV + +GQSKG+GFVQFD E++A A + L+G ++ K++FV F+ K ER +A
Sbjct: 142 KV-VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 657 FQNVYVKNLSESTTEDDFTKIFGEFGPITSVVIMRDQDGKSKCFGFVNFDNPDDAARAVE 836
NVYVKNL E+ T+D +F ++G ++SVV+MRD G+S+ FGFVNF NP++A +A+E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 837 ALNGKKFDDKEWYVGKAQKKSERENELKLRFEQSMKEAADKYQGANLYVKNLDDSIVDDK 1016
+L G + K+ +VGKA KK ER LK +F + A + +NLYVKNL +S+ + +
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNF-IAKPNMRWSNLYVKNLSESMNETR 319
Query: 1017 LKELFTPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEANRALAEMNGKMIVSKPLYVALA 1196
L+E+F +G I S KVM NG S+G GFV FS EE+ +A +NG ++ KP+ V +A
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 1197 QRKEDRRARLQAQF-SQMRPVAMAPS 1271
+RKEDR RLQ F +Q R APS
Sbjct: 380 ERKEDRIKRLQQYFQAQPRQYTQAPS 405
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 776,313,954
Number of Sequences: 33410
Number of Extensions: 776313954
Number of Successful Extensions: 41180746
Number of sequences better than 0.0: 0
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