BLASTX 7.6.2
Query= RU02201 /QuerySize=944
(943 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 70 2e-012
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 70 2e-012
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 70 2e-012
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 56 3e-008
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 56 3e-008
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 56 3e-008
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 48 9e-006
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 48 9e-006
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 48 9e-006
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 70 bits (170), Expect = 2e-012
Identities = 41/106 (38%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 254 PVDDRKVGKRKAVAEVNKSSGKLXXXXXXXXXXXXXXXXXXXXFFVFLEEFRITYKQEHP 433
PVDDRKVGKRKA AE K + + FFVFLE+FR+T+K+E+P
Sbjct: 19 PVDDRKVGKRKAPAE--KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENP 76
Query: 434 NXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMNAYN 571
N WKSMS EYEK M+AYN
Sbjct: 77 NVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 70 bits (170), Expect = 2e-012
Identities = 41/106 (38%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 254 PVDDRKVGKRKAVAEVNKSSGKLXXXXXXXXXXXXXXXXXXXXFFVFLEEFRITYKQEHP 433
PVDDRKVGKRKA AE K + + FFVFLE+FR+T+K+E+P
Sbjct: 19 PVDDRKVGKRKAPAE--KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENP 76
Query: 434 NXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMNAYN 571
N WKSMS EYEK M+AYN
Sbjct: 77 NVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 70 bits (170), Expect = 2e-012
Identities = 41/106 (38%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 254 PVDDRKVGKRKAVAEVNKSSGKLXXXXXXXXXXXXXXXXXXXXFFVFLEEFRITYKQEHP 433
PVDDRKVGKRKA AE K + + FFVFLE+FR+T+K+E+P
Sbjct: 19 PVDDRKVGKRKAPAE--KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENP 76
Query: 434 NXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMNAYN 571
N WKSMS EYEK M+AYN
Sbjct: 77 NVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 56 bits (133), Expect = 3e-008
Identities = 26/65 (40%), Positives = 31/65 (47%)
Frame = +2
Query: 383 FFVFLEEFRITYKQEHPNXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMN 562
FFVF+E+FR+TYK+EHP WKS+S EYEK M
Sbjct: 42 FFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMK 101
Query: 563 AYNTK 577
AYN K
Sbjct: 102 AYNKK 106
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 56 bits (133), Expect = 3e-008
Identities = 26/65 (40%), Positives = 31/65 (47%)
Frame = +2
Query: 383 FFVFLEEFRITYKQEHPNXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMN 562
FFVF+E+FR+TYK+EHP WKS+S EYEK M
Sbjct: 42 FFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMK 101
Query: 563 AYNTK 577
AYN K
Sbjct: 102 AYNKK 106
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 56 bits (133), Expect = 3e-008
Identities = 26/65 (40%), Positives = 31/65 (47%)
Frame = +2
Query: 383 FFVFLEEFRITYKQEHPNXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMN 562
FFVF+E+FR+TYK+EHP WKS+S EYEK M
Sbjct: 42 FFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMK 101
Query: 563 AYNTK 577
AYN K
Sbjct: 102 AYNKK 106
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 48 bits (112), Expect = 9e-006
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +2
Query: 383 FFVFLEEFRITYKQEHPNXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMN 562
FFVF+E+FR T+K+E+P WKS+S EYEK +
Sbjct: 45 FFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIK 104
Query: 563 AYNTK 577
AYN K
Sbjct: 105 AYNKK 109
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 48 bits (112), Expect = 9e-006
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +2
Query: 383 FFVFLEEFRITYKQEHPNXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMN 562
FFVF+E+FR T+K+E+P WKS+S EYEK +
Sbjct: 45 FFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIK 104
Query: 563 AYNTK 577
AYN K
Sbjct: 105 AYNKK 109
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 48 bits (112), Expect = 9e-006
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +2
Query: 383 FFVFLEEFRITYKQEHPNXXXXXXXXXXXXXXWKSMSXXXXXXXXXXXXXXXTEYEKLMN 562
FFVF+E+FR T+K+E+P WKS+S EYEK +
Sbjct: 45 FFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIK 104
Query: 563 AYNTK 577
AYN K
Sbjct: 105 AYNKK 109
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 776,313,954
Number of Sequences: 33410
Number of Extensions: 776313954
Number of Successful Extensions: 41180746
Number of sequences better than 0.0: 0
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