BLASTX 7.6.2
Query= RU02362 /QuerySize=507
(506 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G41920.1 | Symbols: | scarecrow transcription... 129 9e-031
TAIR9_protein||AT3G54220.1 | Symbols: SCR, SGR1 | SCR (SCARECROW... 99 1e-021
TAIR9_protein||AT1G63100.1 | Symbols: | scarecrow transcription... 60 6e-010
TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transc... 56 1e-008
TAIR9_protein||AT5G66770.1 | Symbols: | scarecrow transcription... 53 1e-007
TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSO... 49 1e-006
TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELL... 49 2e-006
TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); ... 47 6e-006
TAIR9_protein||AT1G55580.1 | Symbols: LAS, SCL18 | LAS (Lateral ... 46 1e-005
TAIR9_protein||AT3G60630.1 | Symbols: | scarecrow transcription... 46 1e-005
>TAIR9_protein||AT5G41920.1 | Symbols: | scarecrow transcription factor family
protein | chr5:16779982-16781199 FORWARD
Length = 406
Score = 129 bits (324), Expect = 9e-031
Identities = 67/95 (70%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Frame = +1
Query: 1 LSSPFGSSPERVGAYFAHALQTRVISS-CXXXXXXXXXXXXXVAQSQRIFNALQAYNSIS 177
+ SPFGSSPERV AYFA ALQTRVISS V QSQ+IF+ALQ YNS+S
Sbjct: 69 ICSPFGSSPERVVAYFAQALQTRVISSYLSGACSPLSEKPLTVVQSQKIFSALQTYNSVS 128
Query: 178 PLVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGL 282
PL+KFSHFTANQAIFQALDGED VH+IDLD+MQGL
Sbjct: 129 PLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGL 163
Score = 107 bits (267), Expect = 3e-024
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = +2
Query: 278 ASRSKKIRSMRITGFGASTELLESTGRRLADFASSLGLPFEFQPLEGKIGSISELSQLGI 457
ASR +K+RS+RITGFG+S++LL STGRRLADFASSL LPFEF P+EG IG++ + SQL
Sbjct: 173 ASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLAT 232
Query: 458 RPSEATVVHWMHHCLY 505
R EA VVHWM H LY
Sbjct: 233 RQGEAVVVHWMQHRLY 248
>TAIR9_protein||AT3G54220.1 | Symbols: SCR, SGR1 | SCR (SCARECROW); protein
binding / protein homodimerization/ sequence-specific DNA binding /
transcription factor | chr3:20070550-20072625 FORWARD
Length = 654
Score = 99 bits (246), Expect = 1e-021
Identities = 48/94 (51%), Positives = 64/94 (68%)
Frame = +1
Query: 1 LSSPFGSSPERVGAYFAHALQTRVISSCXXXXXXXXXXXXXVAQSQRIFNALQAYNSISP 180
LS+P+G+S +RV AYF+ A+ R+++SC S ++ +A Q +N ISP
Sbjct: 319 LSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISP 378
Query: 181 LVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGL 282
LVKFSHFTANQAI +A + ED VH+IDLDIMQGL
Sbjct: 379 LVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGL 412
Score = 79 bits (192), Expect = 2e-015
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +2
Query: 278 ASRSKKIRSMRITGFGASTELLESTGRRLADFASSLGLPFEFQPLEGKIGSISELSQLGI 457
ASR +R+TG G S E L++TG+RL+DFA LGLPFEF PL K+G++ + +L +
Sbjct: 422 ASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNL-DTERLNV 480
Query: 458 RPSEATVVHWMHHCLY 505
R EA VHW+ H LY
Sbjct: 481 RKREAVAVHWLQHSLY 496
>TAIR9_protein||AT1G63100.1 | Symbols: | scarecrow transcription factor family
protein | chr1:23399391-23401367 REVERSE
Length = 659
Score = 60 bits (144), Expect = 6e-010
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 4 SSPFGSSP-ERVGAYFAHALQTRVISSCXXXXXXXXXXXXXVAQSQRIFNALQAYNSISP 180
+SP G +P R+ AY+ AL RV NAL+ N ++P
Sbjct: 304 ASPRGRTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTP 363
Query: 181 LVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGL 282
+ KF HFTAN+ + +A +G++ VH+ID DI QGL
Sbjct: 364 IPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGL 397
>TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transcription factor
| chr1:18678177-18679625 REVERSE
Length = 483
Score = 56 bits (133), Expect = 1e-008
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +1
Query: 1 LSSPFGSSPERVGAYFAHALQTRVISSCXXXXXXXXXXXXXVAQSQRIFNALQAYNSISP 180
L+SP G + +R+ AYF AL R++ S + + + + P
Sbjct: 83 LASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFP 142
Query: 181 LVKFSHFTANQAIFQALDGEDHVHVIDLD 267
++K S+ N+AI +A++GE VHVIDLD
Sbjct: 143 ILKVSYLLTNRAILEAMEGEKMVHVIDLD 171
>TAIR9_protein||AT5G66770.1 | Symbols: | scarecrow transcription factor family
protein | chr5:26660723-26662477 FORWARD
Length = 585
Score = 53 bits (125), Expect = 1e-007
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +1
Query: 7 SPFGSSPERVGAYFAHALQTRVISSCXXXXXXXXXXXXXVAQSQRIFNALQAYNSISPLV 186
S G ERV YF AL R+ + + ++ + + + N P
Sbjct: 247 SELGDPTERVAFYFTEALSNRLSPNSPATSSSS-------SSTEDLILSYKTLNDACPYS 299
Query: 187 KFSHFTANQAIFQALDGEDHVHVIDLDIMQGL 282
KF+H TANQAI +A + + +H++D I+QG+
Sbjct: 300 KFAHLTANQAILEATEKSNKIHIVDFGIVQGI 331
>TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1);
protein binding / transcription factor | chr2:255581-257344 REVERSE
Length = 588
Score = 49 bits (115), Expect = 1e-006
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +1
Query: 178 PLVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGL 282
P +KF+HFTANQAI +A +G+ VHVID + QGL
Sbjct: 300 PYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGL 334
>TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELLIC ACID
INSENSITIVE); transcription factor | chr1:5149414-5151015 FORWARD
Length = 534
Score = 49 bits (114), Expect = 2e-006
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 178 PLVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGL 282
P +KF+HFTANQAI +A G+ VHVID + QGL
Sbjct: 248 PYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGL 282
>TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); transcription
factor | chr3:819636-821279 REVERSE
Length = 548
Score = 47 bits (110), Expect = 6e-006
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 31 RVGAYFAHALQTRVISSCXXXXXXXXXXXXXVAQSQRIFNALQAYNSISPLVKFSHFTAN 210
+V YFA AL R+ V S + Y S P +KF+HFTAN
Sbjct: 219 KVATYFAQALARRIYRD----YTAETDVCAAVNPSFEEVLEMHFYES-CPYLKFAHFTAN 273
Query: 211 QAIFQALDGEDHVHVIDLDIMQGL 282
QAI +A+ VHVIDL + QG+
Sbjct: 274 QAILEAVTTARRVHVIDLGLNQGM 297
>TAIR9_protein||AT1G55580.1 | Symbols: LAS, SCL18 | LAS (Lateral Suppressor);
transcription factor | chr1:20764106-20765443 FORWARD
Length = 446
Score = 46 bits (108), Expect = 1e-005
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = +1
Query: 166 NSISPLVKFSHFTANQAIFQALDGEDH--VHVIDLDIMQGL 282
N ++P ++F H TANQAI A + D+ +H++DLDI QGL
Sbjct: 150 NQLTPFIRFGHLTANQAILDATETNDNGALHILDLDISQGL 190
>TAIR9_protein||AT3G60630.1 | Symbols: | scarecrow transcription factor family
protein | chr3:22410496-22412367 REVERSE
Length = 624
Score = 46 bits (108), Expect = 1e-005
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +1
Query: 151 ALQAYNSISPLVKFSHFTANQAIFQALDGEDHVHVIDLDIMQG 279
A +A++ SP ++F +FTANQ I ++ +G D +H++D DI G
Sbjct: 329 AYRAFSETSPFLQFVNFTANQTILESFEGFDRIHIVDFDIGYG 371
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 776,313,954
Number of Sequences: 33410
Number of Extensions: 776313954
Number of Successful Extensions: 41180746
Number of sequences better than 0.0: 0
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