BLASTX 7.6.2
Query= RU02512 /QuerySize=679
(678 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO... 95 3e-020
TAIR9_protein||AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (... 83 1e-016
TAIR9_protein||AT2G46670.1 | Symbols: | pseudo-response regulat... 83 1e-016
TAIR9_protein||AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (... 83 1e-016
TAIR9_protein||AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABI... 81 6e-016
TAIR9_protein||AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABI... 78 5e-015
TAIR9_protein||AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (... 75 4e-014
TAIR9_protein||AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-... 54 6e-008
TAIR9_protein||AT1G73870.1 | Symbols: | zinc finger (B-box type... 54 8e-008
TAIR9_protein||AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST I... 52 2e-007
TAIR9_protein||AT5G14370.1 | Symbols: | LOCATED IN: chloroplast... 52 2e-007
TAIR9_protein||AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular... 52 4e-007
TAIR9_protein||AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular... 52 4e-007
TAIR9_protein||AT1G04500.1 | Symbols: | zinc finger CONSTANS-re... 51 5e-007
TAIR9_protein||AT1G63820.1 | Symbols: | INVOLVED IN: biological... 51 5e-007
TAIR9_protein||AT4G24470.1 | Symbols: ZIM, TIFY1 | TIFY1; transc... 49 3e-006
TAIR9_protein||AT4G24470.2 | Symbols: ZIM | TIFY1; transcription... 49 3e-006
TAIR9_protein||AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); tr... 47 1e-005
>TAIR9_protein||AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE
REGULATOR 7); transcription regulator/ two-component response regulator
| chr5:638283-641461 REVERSE
Length = 728
Score = 95 bits (235), Expect = 3e-020
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = -3
Query: 490 DENKFSQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQT 338
DENK SQREAALTKFR KR ERCFRKKVRYQSRK+LAEQRPRVRGQFVR+T
Sbjct: 662 DENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKT 712
>TAIR9_protein||AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription
regulator/ two-component response regulator | chr2:19233422-19234901
FORWARD
Length = 352
Score = 83 bits (204), Expect = 1e-016
Identities = 40/54 (74%), Positives = 47/54 (87%)
Frame = -3
Query: 475 SQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSENTTRT 314
SQREAAL KFRLKR +RCF KKVRYQSRK+LAEQRPRV+GQFVR S+ +T++
Sbjct: 298 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDASTKS 351
>TAIR9_protein||AT2G46670.1 | Symbols: | pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative |
chr2:19164589-19165233 REVERSE
Length = 184
Score = 83 bits (204), Expect = 1e-016
Identities = 40/54 (74%), Positives = 47/54 (87%)
Frame = -3
Query: 475 SQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSENTTRT 314
SQREAAL KFRLKR +RCF KKVRYQSRK+LAEQRPRV+GQFVR S+ +T++
Sbjct: 130 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDASTKS 183
>TAIR9_protein||AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription
regulator/ two-component response regulator | chr2:19232874-19234901
FORWARD
Length = 469
Score = 83 bits (204), Expect = 1e-016
Identities = 40/54 (74%), Positives = 47/54 (87%)
Frame = -3
Query: 475 SQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSENTTRT 314
SQREAAL KFRLKR +RCF KKVRYQSRK+LAEQRPRV+GQFVR S+ +T++
Sbjct: 415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDASTKS 468
>TAIR9_protein||AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 5); transcription regulator/ two-component
response regulator | chr5:8356204-8358873 REVERSE
Length = 668
Score = 81 bits (198), Expect = 6e-016
Identities = 36/47 (76%), Positives = 43/47 (91%)
Frame = -3
Query: 472 QREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMS 332
QREAALTKFR+KR +RC+ KKVRY+SRK+LAEQRPR++GQFVRQ S
Sbjct: 617 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 663
>TAIR9_protein||AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 3); transcription regulator/ two-component
response regulator | chr5:24198215-24200502 REVERSE
Length = 496
Score = 78 bits (190), Expect = 5e-015
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = -3
Query: 484 NKFSQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQ 341
++++QREAAL KFRLKR ERCF KKVRY SRK+LAEQRP V+GQF+R+
Sbjct: 437 DRWAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484
>TAIR9_protein||AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB
EXPRESSION 1); transcription regulator/ two-component response
regulator | chr5:24675540-24678176 FORWARD
Length = 619
Score = 75 bits (182), Expect = 4e-014
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = -3
Query: 484 NKFSQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSEN 326
NK +RE AL KFR KRN+RCF KK+RY +RKRLAE+RPRV+GQFVR+ N
Sbjct: 528 NKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVN 580
>TAIR9_protein||AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543
REVERSE
Length = 395
Score = 54 bits (129), Expect = 6e-008
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = -3
Query: 469 REAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSEN 326
REA++ +++ KR R F KK+RYQ RK A+QRPR++G+FVR+ + N
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKGRFVRRPNARN 388
>TAIR9_protein||AT1G73870.1 | Symbols: | zinc finger (B-box type) family
protein | chr1:27779214-27780522 FORWARD
Length = 393
Score = 54 bits (128), Expect = 8e-008
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = -3
Query: 472 QREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQT 338
+REA + +++ KR R F KK+RY+ RK AEQRPR++G+FV++T
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRT 388
>TAIR9_protein||AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170763 FORWARD
Length = 436
Score = 52 bits (124), Expect = 2e-007
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = -3
Query: 469 REAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQ 341
REA++ +++ KR R F KK+RYQ RK A+QRPR++G+FVR+
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425
>TAIR9_protein||AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis
thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits
to 1506 proteins in 139 species: Archae - 0; Bacteria - 8; Metazoa -
291; Fungi - 53; Plants - 1145; Viruses - 0; Other Eukaryotes - 318
(source: NCBI BLink). | chr5:4632147-4633651 REVERSE
Length = 340
Score = 52 bits (124), Expect = 2e-007
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = -3
Query: 469 REAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQ 341
REA+L +++ KR R F K++RYQ RK AE+RPRV+G+FV++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
>TAIR9_protein||AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED
DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis;
CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger CONSTANS-related
(TAIR:AT1G04500.1); Has 7691 Blast hits to 4729 proteins in 129
species: Archae - 8; Bacteria - 25; Metazoa - 148; Fungi - 114; Plants
- 918; Viruses - 0; Other Eukaryotes - 6478 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 411
Score = 52 bits (122), Expect = 4e-007
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = -3
Query: 472 QREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSENTTRTTDS*H 299
QR+ + ++ KRNER F KK++Y RK LA+ RPRVRG+F + R S H
Sbjct: 310 QRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEPNRQAFSSH 367
>TAIR9_protein||AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED
DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis;
CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger CONSTANS-related
(TAIR:AT1G04500.1); Has 7688 Blast hits to 4734 proteins in 129
species: Archae - 8; Bacteria - 25; Metazoa - 148; Fungi - 118; Plants
- 919; Viruses - 0; Other Eukaryotes - 6470 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 410
Score = 52 bits (122), Expect = 4e-007
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = -3
Query: 472 QREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSENTTRTTDS*H 299
QR+ + ++ KRNER F KK++Y RK LA+ RPRVRG+F + R S H
Sbjct: 309 QRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEPNRQAFSSH 366
>TAIR9_protein||AT1G04500.1 | Symbols: | zinc finger CONSTANS-related |
chr1:1221757-1224235 REVERSE
Length = 387
Score = 51 bits (121), Expect = 5e-007
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = -3
Query: 496 RVDENKFSQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSENTTR 317
+V + QR+ + ++ KRNER F KK++Y RK LA+ RPRVRG+F + R
Sbjct: 279 KVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGEPNR 338
Query: 316 TTDS*H 299
S H
Sbjct: 339 QACSSH 344
>TAIR9_protein||AT1G63820.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower,
root; EXPRESSED DURING: petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G41380.1); Has 907 Blast hits to 907 proteins in 64 species:
Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 882; Viruses
- 0; Other Eukaryotes - 24 (source: NCBI BLink). |
chr1:23682529-23684050 REVERSE
Length = 294
Score = 51 bits (121), Expect = 5e-007
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -3
Query: 496 RVDENKFSQREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVR 344
RV +R+ ++K+R KR +R F K ++Y RK LA+ RPRVRG+F R
Sbjct: 183 RVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFAR 233
>TAIR9_protein||AT4G24470.1 | Symbols: ZIM, TIFY1 | TIFY1; transcription factor
| chr4:12645785-12647734 FORWARD
Length = 310
Score = 49 bits (114), Expect = 3e-006
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = -3
Query: 472 QREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSE 329
QR +L +FR KRN RCF KKVRY R+ +A + R +GQF M++
Sbjct: 145 QRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD 192
>TAIR9_protein||AT4G24470.2 | Symbols: ZIM | TIFY1; transcription factor |
chr4:12645785-12647734 FORWARD
Length = 310
Score = 49 bits (114), Expect = 3e-006
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = -3
Query: 472 QREAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQTMSE 329
QR +L +FR KRN RCF KKVRY R+ +A + R +GQF M++
Sbjct: 145 QRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD 192
>TAIR9_protein||AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171343-5172697 REVERSE
Length = 374
Score = 47 bits (110), Expect = 1e-005
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = -3
Query: 469 REAALTKFRLKRNERCFRKKVRYQSRKRLAEQRPRVRGQFVRQ 341
REA + ++R KR R F K +RY SRK AE RPRV G+F ++
Sbjct: 306 REARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 776,313,954
Number of Sequences: 33410
Number of Extensions: 776313954
Number of Successful Extensions: 41180746
Number of sequences better than 0.0: 0
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