BLASTX 7.6.2
Query= RU02660 /QuerySize=754
(753 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G05675.2 | Symbols: | protein binding | chr3:... 155 4e-038
TAIR9_protein||AT3G05675.1 | Symbols: | protein binding | chr3:... 155 4e-038
TAIR9_protein||AT3G50780.1 | Symbols: | INVOLVED IN: biological... 51 6e-007
TAIR9_protein||AT5G60050.1 | Symbols: | PRLI-interacting factor... 50 1e-006
>TAIR9_protein||AT3G05675.2 | Symbols: | protein binding | chr3:1658425-1659859
REVERSE
Length = 442
Score = 155 bits (390), Expect = 4e-038
Identities = 79/169 (46%), Positives = 114/169 (67%), Gaps = 9/169 (5%)
Frame = +3
Query: 252 GDQNTSDVVICLKDREGRHQQFYSHSSVLIKRSKYFAERLSNPDPSNSI-------NVHC 410
GD+++SD+V+ L++ EGR Y HS +L ++S+YFA+RLS+ P+ I V C
Sbjct: 15 GDRSSSDIVVRLRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDSRYCVEVIC 74
Query: 411 SEVNYDHHVNLLRLLYLPTELILD--TLDSVKSAVGILQSAVSFKCDEIVSCCIQYLEAV 584
E +YDHH+NLLRLLY+ ++ + + +VKSA+GIL A C +IV+ C+ YLEAV
Sbjct: 75 QESDYDHHINLLRLLYVVSDDVHEDNLCHNVKSALGILSVAKELSCPQIVTACVNYLEAV 134
Query: 585 PWEDKEEEHILKAVSKLGPVAMPIIARIQPVDLAATKTVLISAIRVATS 731
PWE+ EEE IL+ V ++G A PI+AR+QPVD +A + +SA R ATS
Sbjct: 135 PWEEGEEEEILRIVPRIGSEAEPILARLQPVDQSAVLEIFVSAFRFATS 183
>TAIR9_protein||AT3G05675.1 | Symbols: | protein binding | chr3:1658425-1659859
REVERSE
Length = 442
Score = 155 bits (390), Expect = 4e-038
Identities = 79/169 (46%), Positives = 114/169 (67%), Gaps = 9/169 (5%)
Frame = +3
Query: 252 GDQNTSDVVICLKDREGRHQQFYSHSSVLIKRSKYFAERLSNPDPSNSI-------NVHC 410
GD+++SD+V+ L++ EGR Y HS +L ++S+YFA+RLS+ P+ I V C
Sbjct: 15 GDRSSSDIVVRLRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDSRYCVEVIC 74
Query: 411 SEVNYDHHVNLLRLLYLPTELILD--TLDSVKSAVGILQSAVSFKCDEIVSCCIQYLEAV 584
E +YDHH+NLLRLLY+ ++ + + +VKSA+GIL A C +IV+ C+ YLEAV
Sbjct: 75 QESDYDHHINLLRLLYVVSDDVHEDNLCHNVKSALGILSVAKELSCPQIVTACVNYLEAV 134
Query: 585 PWEDKEEEHILKAVSKLGPVAMPIIARIQPVDLAATKTVLISAIRVATS 731
PWE+ EEE IL+ V ++G A PI+AR+QPVD +A + +SA R ATS
Sbjct: 135 PWEEGEEEEILRIVPRIGSEAEPILARLQPVDQSAVLEIFVSAFRFATS 183
>TAIR9_protein||AT3G50780.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: PRLI-interacting factor-related
(TAIR:AT1G63850.1); Has 173 Blast hits to 173 proteins in 14 species:
Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 164; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). |
chr3:18875662-18877341 REVERSE
Length = 521
Score = 51 bits (121), Expect = 6e-007
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Frame = +3
Query: 246 KLGDQNTSDVVICLKDREGRHQQFYSHSSVLIKRSKYFAERLSNPDPSNSINVHCSEVNY 425
+ G+ +SD + L ++G + H VL+ S +FA++L+ D + S +
Sbjct: 118 EFGEPGSSDAKVILVGKQGFCVKLSVHKKVLVDHSCFFAKKLAEKDSVFACLEIESCEDA 177
Query: 426 DHHVNLLRLLYLPTELILDTLDSVKSAVGILQSAVSFKCDEIVSCCIQYLEAVPW-EDKE 602
+ +V + L+Y +V + +L+ A + C+ YLEAVPW ++E
Sbjct: 178 ELYVETIGLMYCKDMKQRLMKQNVSRVLRVLKVAELLGFSSCIQSCLDYLEAVPWVGEEE 237
Query: 603 EEHILKAVSKL---GPVAMPIIARI 668
EE ++ ++ +L G P++ R+
Sbjct: 238 EEKVISSILRLKTEGVGVTPVLKRV 262
>TAIR9_protein||AT5G60050.1 | Symbols: | PRLI-interacting factor-related |
chr5:24183680-24185264 REVERSE
Length = 500
Score = 50 bits (118), Expect = 1e-006
Identities = 37/127 (29%), Positives = 70/127 (55%), Gaps = 8/127 (6%)
Frame = +3
Query: 270 DVVICLKDREGRHQQFYSHSSVLIKRSKYFAERL-SNPDPSNSINVHCSEV-NYDHHVNL 443
DV + + ++G H VL ++S++F E++ S + S V SE + + +V
Sbjct: 100 DVKLTVVGKDGYRVTMDVHRKVLSEKSRFFMEKMNSRREKGVSHMVEISECDDLEIYVET 159
Query: 444 LRLLY---LPTELILDTLDSVKSAVGILQSAVSFKCDEIVSCCIQYLEAVPWEDKEEEHI 614
+ L+Y L +LI + + + + + + +A+SF DE V C+++LEAVPW + EEE +
Sbjct: 160 VVLMYSDDLKKKLIGENVIKILALLKV-SAAISF--DEGVMSCLEHLEAVPWSEDEEETV 216
Query: 615 LKAVSKL 635
+ + +L
Sbjct: 217 VTCLEEL 223
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 835,916,284
Number of Sequences: 33410
Number of Extensions: 835916284
Number of Successful Extensions: 46207245
Number of sequences better than 0.0: 0
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