BLASTX 7.6.2
Query= RU03656 /QuerySize=848
(847 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G42740.1 | Symbols: RPL16A | RPL16A; structura... 307 5e-084
TAIR9_protein||AT3G58700.1 | Symbols: | 60S ribosomal protein L... 307 5e-084
TAIR9_protein||AT4G18730.1 | Symbols: RPL16B | RPL16B; structura... 307 5e-084
TAIR9_protein||AT5G45775.2 | Symbols: | 60S ribosomal protein L... 307 5e-084
TAIR9_protein||AT5G45775.1 | Symbols: | 60S ribosomal protein L... 290 1e-078
>TAIR9_protein||AT2G42740.1 | Symbols: RPL16A | RPL16A; structural constituent
of ribosome | chr2:17791794-17792946 FORWARD
Length = 183
Score = 307 bits (786), Expect = 5e-084
Identities = 156/180 (86%), Positives = 161/180 (89%)
Frame = +1
Query: 91 MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 270
MASEKKL+NPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 271 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 450
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 451 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILNKSQAI 630
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVILNKSQ I
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT3G58700.1 | Symbols: | 60S ribosomal protein L11 (RPL11B) |
chr3:21711661-21712816 FORWARD
Length = 183
Score = 307 bits (786), Expect = 5e-084
Identities = 156/180 (86%), Positives = 161/180 (89%)
Frame = +1
Query: 91 MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 270
MASEKKL+NPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 271 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 450
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 451 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILNKSQAI 630
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVILNKSQ I
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT4G18730.1 | Symbols: RPL16B | RPL16B; structural constituent
of ribosome | chr4:10302238-10303206 FORWARD
Length = 183
Score = 307 bits (786), Expect = 5e-084
Identities = 156/180 (86%), Positives = 161/180 (89%)
Frame = +1
Query: 91 MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 270
MASEKKL+NPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 271 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 450
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 451 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILNKSQAI 630
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVILNKSQ I
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT5G45775.2 | Symbols: | 60S ribosomal protein L11 (RPL11D) |
chr5:18565281-18566496 REVERSE
Length = 183
Score = 307 bits (786), Expect = 5e-084
Identities = 156/180 (86%), Positives = 161/180 (89%)
Frame = +1
Query: 91 MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 270
MASEKKL+NPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 271 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 450
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 451 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILNKSQAI 630
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVILNKSQ I
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT5G45775.1 | Symbols: | 60S ribosomal protein L11 (RPL11D) |
chr5:18565281-18566377 REVERSE
Length = 173
Score = 290 bits (740), Expect = 1e-078
Identities = 147/170 (86%), Positives = 151/170 (88%)
Frame = +1
Query: 121 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 300
MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 301 VTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 480
VTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 481 VVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILNKSQAI 630
VVLE IQHRVTKDDAMKWFQVKYEGVILNKSQ I
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 170
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,010,346,573
Number of Sequences: 33410
Number of Extensions: 1010346573
Number of Successful Extensions: 51525802
Number of sequences better than 0.0: 0
|