BLASTX 7.6.2
Query= RU03727 /QuerySize=1125
(1124 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G36130.1 | Symbols: | 60S ribosomal protein L... 289 3e-078
TAIR9_protein||AT2G18020.1 | Symbols: EMB2296 | EMB2296 (embryo ... 285 6e-077
TAIR9_protein||AT3G51190.1 | Symbols: | structural constituent ... 254 1e-067
TAIR9_protein||ATCG00830.1 | Symbols: RPL2.1 | encodes a chlorop... 81 1e-015
TAIR9_protein||ATCG01310.1 | Symbols: RPL2.2 | encodes a chlorop... 81 1e-015
TAIR9_protein||AT2G44065.1 | Symbols: | ribosomal protein L2 fa... 75 5e-014
TAIR9_protein||AT2G44065.2 | Symbols: | ribosomal protein L2 fa... 75 5e-014
>TAIR9_protein||AT4G36130.1 | Symbols: | 60S ribosomal protein L8 (RPL8C) |
chr4:17097613-17098656 FORWARD
Length = 259
Score = 289 bits (738), Expect = 3e-078
Identities = 134/142 (94%), Positives = 139/142 (97%)
Frame = -2
Query: 763 PTGAVICNVEHHVGDRGTLARASGDYAVVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIG 584
P GAVICNVEHHVGDRG ARASGDYA+VI+HNPDNDTSRIKLPSG+KKIVPSGCRAMIG
Sbjct: 108 PEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIG 167
Query: 583 QVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 404
QVAGGGRTEKPMLKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR
Sbjct: 168 QVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 227
Query: 403 DAPPGQKVGLIAARRTGRLRGQ 338
DAPPG+KVGLIAARRTGRLRGQ
Sbjct: 228 DAPPGKKVGLIAARRTGRLRGQ 249
Score = 214 bits (544), Expect = 9e-056
Identities = 101/123 (82%), Positives = 113/123 (91%), Gaps = 2/123 (1%)
Frame = -1
Query: 1085 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAR 906
MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVVT+IIHDPGRGAPLAR
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 905 VSFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKANLVVGNVFPVRSIPDGS--CDLQRRA 732
V+FRHPFR+KKQ ELFVAAEG+YTGQF+YCGKKA LVVGNV P+RSIP+G+ C+++
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120
Query: 731 PRR 723
R
Sbjct: 121 GDR 123
>TAIR9_protein||AT2G18020.1 | Symbols: EMB2296 | EMB2296 (embryo defective
2296); structural constituent of ribosome | chr2:7837151-7838160
FORWARD
Length = 259
Score = 285 bits (727), Expect = 6e-077
Identities = 132/142 (92%), Positives = 139/142 (97%)
Frame = -2
Query: 763 PTGAVICNVEHHVGDRGTLARASGDYAVVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIG 584
P GAV+CNVEHHVGDRG LARASGDYA+VI+HNPD+DT+RIKLPSG+KKIVPSGCRAMIG
Sbjct: 108 PEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIG 167
Query: 583 QVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 404
QVAGGGRTEKPMLKAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR
Sbjct: 168 QVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 227
Query: 403 DAPPGQKVGLIAARRTGRLRGQ 338
DAPPGQKVGLIAARRTGRLRGQ
Sbjct: 228 DAPPGQKVGLIAARRTGRLRGQ 249
Score = 214 bits (544), Expect = 9e-056
Identities = 101/123 (82%), Positives = 113/123 (91%), Gaps = 2/123 (1%)
Frame = -1
Query: 1085 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAR 906
MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVVT+IIHDPGRGAPLAR
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 905 VSFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKANLVVGNVFPVRSIPDGS--CDLQRRA 732
V+FRHPFR+KKQ ELFVAAEG+YTGQF+YCGKKA LVVGNV P+RSIP+G+ C+++
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120
Query: 731 PRR 723
R
Sbjct: 121 GDR 123
>TAIR9_protein||AT3G51190.1 | Symbols: | structural constituent of ribosome |
chr3:19016606-19017547 REVERSE
Length = 261
Score = 254 bits (647), Expect = 1e-067
Identities = 117/141 (82%), Positives = 129/141 (91%)
Frame = -2
Query: 763 PTGAVICNVEHHVGDRGTLARASGDYAVVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIG 584
P GAVICNVE HVGDRG LARASGDYA+VI+HNP+++T+R+KLPSG+KKI+PS CRAMIG
Sbjct: 109 PEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIG 168
Query: 583 QVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 404
QVAGGGRTEKP+LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRR
Sbjct: 169 QVAGGGRTEKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRR 228
Query: 403 DAPPGQKVGLIAARRTGRLRG 341
D G KVG IAARRTGR RG
Sbjct: 229 DKSAGAKVGQIAARRTGRRRG 249
Score = 203 bits (516), Expect = 2e-052
Identities = 95/112 (84%), Positives = 107/112 (95%), Gaps = 1/112 (0%)
Frame = -1
Query: 1085 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLA 909
MGRVIRAQRKG AGSVFKSHTHHRKGPA+FRSLD+GERNGYLKG+VT+IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 908 RVSFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKANLVVGNVFPVRSIPDGS 753
RV+FRHPFRY KQ ELFVAAEG+YTGQ++YCGKKANL+VGNV P+ SIP+G+
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGA 112
>TAIR9_protein||ATCG00830.1 | Symbols: RPL2.1 | encodes a chloroplast ribosomal
protein L2, a constituent of the large subunit of the ribosomal complex
| chrC:84337-85843 REVERSE
Length = 275
Score = 81 bits (198), Expect = 1e-015
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 15/111 (13%)
Frame = -2
Query: 763 PTGAVICNVEHHVGDRGTLARASGDYAVVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIG 584
P G I N+E +G G LARA+G A +I+ + ++ +KLPSG +++ C A +G
Sbjct: 134 PLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVG 191
Query: 583 QVAGGGRTEKPMLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 443
QV G +K + +AG+ CW P VRGV MNPV+HPHGGG
Sbjct: 192 QVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
>TAIR9_protein||ATCG01310.1 | Symbols: RPL2.2 | encodes a chloroplast ribosomal
protein L2, a constituent of the large subunit of the ribosomal complex
| chrC:152806-154312 FORWARD
Length = 275
Score = 81 bits (198), Expect = 1e-015
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 15/111 (13%)
Frame = -2
Query: 763 PTGAVICNVEHHVGDRGTLARASGDYAVVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIG 584
P G I N+E +G G LARA+G A +I+ + ++ +KLPSG +++ C A +G
Sbjct: 134 PLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVG 191
Query: 583 QVAGGGRTEKPMLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 443
QV G +K + +AG+ CW P VRGV MNPV+HPHGGG
Sbjct: 192 QVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
>TAIR9_protein||AT2G44065.1 | Symbols: | ribosomal protein L2 family protein |
chr2:18228860-18230368 FORWARD
Length = 215
Score = 75 bits (184), Expect = 5e-014
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = -2
Query: 757 GAVICNVEHHVGDRGTLARASGDYAVVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQV 578
G +I N+E + G + RA+G A ++ P IKLPSG K + + CRA IG V
Sbjct: 71 GTIIHNIEMNPGQGAKMVRAAGTNAKILK-EPAKGKCLIKLPSGDTKWINAKCRATIGTV 129
Query: 577 AGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDA 398
+ K + KAG + PKVRGVAMNP +HPHGGG + S R
Sbjct: 130 SNPSHGTKKLYKAGQSRW-----LGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSV 184
Query: 397 PPGQK 383
P K
Sbjct: 185 SPWGK 189
>TAIR9_protein||AT2G44065.2 | Symbols: | ribosomal protein L2 family protein |
chr2:18228860-18230368 FORWARD
Length = 215
Score = 75 bits (184), Expect = 5e-014
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = -2
Query: 757 GAVICNVEHHVGDRGTLARASGDYAVVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQV 578
G +I N+E + G + RA+G A ++ P IKLPSG K + + CRA IG V
Sbjct: 71 GTIIHNIEMNPGQGAKMVRAAGTNAKILK-EPAKGKCLIKLPSGDTKWINAKCRATIGTV 129
Query: 577 AGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDA 398
+ K + KAG + PKVRGVAMNP +HPHGGG + S R
Sbjct: 130 SNPSHGTKKLYKAGQSRW-----LGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSV 184
Query: 397 PPGQK 383
P K
Sbjct: 185 SPWGK 189
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,039,283,375
Number of Sequences: 33410
Number of Extensions: 1039283375
Number of Successful Extensions: 51547929
Number of sequences better than 0.0: 0
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