BLASTX 7.6.2
Query= RU04042 /QuerySize=653
(652 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G10640.1 | Symbols: VPS60.1 | VPS60.1 | chr3:3... 323 8e-089
TAIR9_protein||AT5G04850.1 | Symbols: VPS60.2 | VPS60.2 | chr5:1... 319 9e-088
TAIR9_protein||AT3G10640.2 | Symbols: VPS60.1 | VPS60.1 | chr3:3... 215 3e-056
TAIR9_protein||AT4G29160.1 | Symbols: SNF7.1 | SNF7.1 | chr4:143... 81 6e-016
TAIR9_protein||AT4G29160.3 | Symbols: SNF7.1 | SNF7.1 | chr4:143... 81 6e-016
TAIR9_protein||AT4G29160.2 | Symbols: SNF7.1 | SNF7.1 | chr4:143... 76 2e-014
>TAIR9_protein||AT3G10640.1 | Symbols: VPS60.1 | VPS60.1 | chr3:3323501-3324905
REVERSE
Length = 236
Score = 323 bits (826), Expect = 8e-089
Identities = 159/187 (85%), Positives = 181/187 (96%), Gaps = 1/187 (0%)
Frame = -1
Query: 559 MKRVFGAKKDKEPPPSVGDASDRINKRGDTVDEKIKKLDVELNRYKEQIKKTRPGPAQEA 380
M+RVFGAKK+ EPPPS+ DASDRINKRGD+V++KIKKLDVEL +YKEQ+KKTRPGPAQEA
Sbjct: 1 MRRVFGAKKNTEPPPSIQDASDRINKRGDSVEDKIKKLDVELCKYKEQLKKTRPGPAQEA 60
Query: 379 VKSRAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMM 200
VK+RAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSANKELKGMM
Sbjct: 61 VKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMM 120
Query: 199 KTVKIQDIDNLQDEMMDLMDV-SKIQETLGRSYSVPDDIDEEELMGELDALEADMGMETE 23
KTVKIQDIDNLQDEMMDLMDV S+IQE+LGRSY++PD +DE++LMGELDALEADMG ETE
Sbjct: 121 KTVKIQDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALEADMGNETE 180
Query: 22 SDGVPSY 2
+DG+PSY
Sbjct: 181 ADGMPSY 187
>TAIR9_protein||AT5G04850.1 | Symbols: VPS60.2 | VPS60.2 | chr5:1408246-1409806
REVERSE
Length = 236
Score = 319 bits (817), Expect = 9e-088
Identities = 156/187 (83%), Positives = 179/187 (95%), Gaps = 1/187 (0%)
Frame = -1
Query: 559 MKRVFGAKKDKEPPPSVGDASDRINKRGDTVDEKIKKLDVELNRYKEQIKKTRPGPAQEA 380
MKR+FGAK +KEPPPS+ DASDRINKRGD+V+EK+K+LD EL +YK+QIK+TRPGPA EA
Sbjct: 1 MKRIFGAKNNKEPPPSIQDASDRINKRGDSVEEKVKRLDAELCKYKDQIKRTRPGPALEA 60
Query: 379 VKSRAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMM 200
+K+RAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSANKELKGMM
Sbjct: 61 IKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMM 120
Query: 199 KTVKIQDIDNLQDEMMDLMD-VSKIQETLGRSYSVPDDIDEEELMGELDALEADMGMETE 23
KTVKIQDIDNLQD+MMDLMD S+IQETLGRSY+VPDDIDE++L+GELDALEADMG ETE
Sbjct: 121 KTVKIQDIDNLQDDMMDLMDESSEIQETLGRSYNVPDDIDEDDLLGELDALEADMGNETE 180
Query: 22 SDGVPSY 2
+DGVPSY
Sbjct: 181 ADGVPSY 187
>TAIR9_protein||AT3G10640.2 | Symbols: VPS60.1 | VPS60.1 | chr3:3323501-3324484
REVERSE
Length = 171
Score = 215 bits (545), Expect = 3e-056
Identities = 106/122 (86%), Positives = 119/122 (97%), Gaps = 1/122 (0%)
Frame = -1
Query: 364 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKI 185
MRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSANKELKGMMKTVKI
Sbjct: 1 MRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMMKTVKI 60
Query: 184 QDIDNLQDEMMDLMDV-SKIQETLGRSYSVPDDIDEEELMGELDALEADMGMETESDGVP 8
QDIDNLQDEMMDLMDV S+IQE+LGRSY++PD +DE++LMGELDALEADMG ETE+DG+P
Sbjct: 61 QDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALEADMGNETEADGMP 120
Query: 7 SY 2
SY
Sbjct: 121 SY 122
>TAIR9_protein||AT4G29160.1 | Symbols: SNF7.1 | SNF7.1 | chr4:14381019-14382342
FORWARD
Length = 220
Score = 81 bits (198), Expect = 6e-016
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Frame = -1
Query: 520 PPSVGDASDRINKRGDTVDEKIKKLDVELNRYKEQIKKTRPGPAQEAVKSRAMRVLKQKR 341
P +A ++K +T++ KK V L + +++K + ++ K A++ LK+KR
Sbjct: 9 PKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKE-YSRAKNKRAAIQCLKRKR 67
Query: 340 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQD 161
+YEGQ + L N + EG K +T+ AL+S +K M K I D+D D
Sbjct: 68 LYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMD 127
Query: 160 EMMDLMD-VSKIQETLGRSYSVPDDIDEEELMGELDALEAD 41
E+ + + + +IQE L D DE+EL ELD LE++
Sbjct: 128 EINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESE 168
>TAIR9_protein||AT4G29160.3 | Symbols: SNF7.1 | SNF7.1 | chr4:14381019-14382342
FORWARD
Length = 220
Score = 81 bits (198), Expect = 6e-016
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Frame = -1
Query: 520 PPSVGDASDRINKRGDTVDEKIKKLDVELNRYKEQIKKTRPGPAQEAVKSRAMRVLKQKR 341
P +A ++K +T++ KK V L + +++K + ++ K A++ LK+KR
Sbjct: 9 PKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKE-YSRAKNKRAAIQCLKRKR 67
Query: 340 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQD 161
+YEGQ + L N + EG K +T+ AL+S +K M K I D+D D
Sbjct: 68 LYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMD 127
Query: 160 EMMDLMD-VSKIQETLGRSYSVPDDIDEEELMGELDALEAD 41
E+ + + + +IQE L D DE+EL ELD LE++
Sbjct: 128 EINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESE 168
>TAIR9_protein||AT4G29160.2 | Symbols: SNF7.1 | SNF7.1 | chr4:14381350-14382342
FORWARD
Length = 193
Score = 76 bits (185), Expect = 2e-014
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Frame = -1
Query: 457 IKKLDVELNRYKEQIKKTRPGPAQEAVKSRAMRVLKQKRMYEGQRDMLYNQTFNLDQVAF 278
+KK E+ + KE + K A++ LK+KR+YEGQ + L N +
Sbjct: 10 LKKAGAEVEKAKEYSRAKN--------KRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMI 61
Query: 277 ASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMD-VSKIQETLGRSYS 101
EG K +T+ AL+S +K M K I D+D DE+ + + + +IQE L
Sbjct: 62 MLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 121
Query: 100 VPDDIDEEELMGELDALEAD 41
D DE+EL ELD LE++
Sbjct: 122 AAADFDEDELAAELDELESE 141
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,680,256
Number of Sequences: 33410
Number of Extensions: 1097680256
Number of Successful Extensions: 56500652
Number of sequences better than 0.0: 0
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