BLASTX 7.6.2
Query= RU04171 /QuerySize=728
(727 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G21450.1 | Symbols: SCL1 | SCL1 (SCARECROW-LIK... 180 1e-045
TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a... 157 7e-039
TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a... 157 7e-039
TAIR9_protein||AT5G52510.1 | Symbols: | scarecrow-like transcri... 149 2e-036
TAIR9_protein||AT4G17230.1 | Symbols: SCL13 | SCL13 (Scarecrow-l... 146 2e-035
TAIR9_protein||AT2G04890.1 | Symbols: SCL21 | SCL21 (SCARECROW-L... 145 3e-035
TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription... 144 6e-035
TAIR9_protein||AT5G66770.1 | Symbols: | scarecrow transcription... 111 6e-025
TAIR9_protein||AT5G59450.1 | Symbols: | scarecrow-like transcri... 97 1e-020
TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); ... 94 8e-020
TAIR9_protein||AT5G17490.1 | Symbols: RGL3 | RGL3 (RGA-LIKE PROT... 84 1e-016
TAIR9_protein||AT1G66350.1 | Symbols: RGL1, RGL | RGL1 (RGA-LIKE... 82 4e-016
TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSO... 77 1e-014
TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELL... 76 2e-014
TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transc... 66 2e-011
TAIR9_protein||AT3G46600.1 | Symbols: | scarecrow transcription... 65 5e-011
TAIR9_protein||AT3G46600.2 | Symbols: | scarecrow transcription... 65 5e-011
TAIR9_protein||AT3G46600.3 | Symbols: | scarecrow transcription... 65 5e-011
TAIR9_protein||AT4G00150.1 | Symbols: | scarecrow-like transcri... 58 5e-009
TAIR9_protein||AT2G37650.1 | Symbols: | scarecrow-like transcri... 57 8e-009
TAIR9_protein||AT3G60630.1 | Symbols: | scarecrow transcription... 56 2e-008
TAIR9_protein||AT4G36710.1 | Symbols: | transcription factor | ... 55 3e-008
>TAIR9_protein||AT1G21450.1 | Symbols: SCL1 | SCL1 (SCARECROW-LIKE 1);
transcription factor | chr1:7509721-7511502 FORWARD
Length = 594
Score = 180 bits (455), Expect = 1e-045
Identities = 102/249 (40%), Positives = 152/249 (61%), Gaps = 13/249 (5%)
Frame = +3
Query: 3 AISEGKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRVNP----VDNPPPVSELF 170
A+SEGK E A ++ L Q+ + + + QR+ +M L +R+ + E
Sbjct: 232 ALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP 291
Query: 171 TQEHAGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLL 350
+ E + QVL+E+ PCF GF+AAN AILEA ++ +VH+IDFDI QG QY L+
Sbjct: 292 SDERLAAMQVLFEVCPCFKFGFLAANGAILEAIKGEE----EVHIIDFDINQGNQYMTLI 347
Query: 351 RALSKRPNGKSSVVKITTVPDNGGEDR----LRSVRQNLSQMAKNLGVGLEFNVVSQKLS 518
R++++ P GK +++T + D R LR + L Q+A++ GV +F + K S
Sbjct: 348 RSIAELP-GKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTS 406
Query: 519 ELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELN 698
++ +LGC+P E + VNFAF+L+ MPDESV+T N RDELL VK L P++VT+VEQ++N
Sbjct: 407 IVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVN 466
Query: 699 TNTAPFMAR 725
TNT+PF R
Sbjct: 467 TNTSPFFPR 475
>TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 157 bits (396), Expect = 7e-039
Identities = 106/248 (42%), Positives = 142/248 (57%), Gaps = 28/248 (11%)
Frame = +3
Query: 30 AAEILTRLTQVTNPRPNSEQR----LLEFMASALKSRVNPVDN-----PPPVS-ELFTQE 179
A ++ +L Q+ + QR LLE + + L S + + P P S EL +
Sbjct: 138 AHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEPASTELLSYM 197
Query: 180 HAGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRAL 359
H +LYE+ P F G+++AN AI EA N+VH+IDF IGQG Q+ L++A
Sbjct: 198 H-----ILYEVCPYFKFGYMSANGAIAEA----MKEENRVHIIDFQIGQGSQWVTLIQAF 248
Query: 360 SKRPNGKSSVVKITTVPD------NGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSE 521
+ RP G ++IT + D GG L V L+++AK V EFN VS +SE
Sbjct: 249 AARPGGPPR-IRITGIDDMTSAYARGG--GLSIVGNRLAKLAKQFNVPFEFNSVSVSVSE 305
Query: 522 LNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNT 701
+ ++LG P E +AVNFAF L+ MPDESVST+N RD LLR VK L+P+VVTLVEQE NT
Sbjct: 306 VKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNT 365
Query: 702 NTAPFMAR 725
NTA F R
Sbjct: 366 NTAAFFPR 373
>TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 157 bits (396), Expect = 7e-039
Identities = 106/248 (42%), Positives = 142/248 (57%), Gaps = 28/248 (11%)
Frame = +3
Query: 30 AAEILTRLTQVTNPRPNSEQR----LLEFMASALKSRVNPVDN-----PPPVS-ELFTQE 179
A ++ +L Q+ + QR LLE + + L S + + P P S EL +
Sbjct: 138 AHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEPASTELLSYM 197
Query: 180 HAGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRAL 359
H +LYE+ P F G+++AN AI EA N+VH+IDF IGQG Q+ L++A
Sbjct: 198 H-----ILYEVCPYFKFGYMSANGAIAEA----MKEENRVHIIDFQIGQGSQWVTLIQAF 248
Query: 360 SKRPNGKSSVVKITTVPD------NGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSE 521
+ RP G ++IT + D GG L V L+++AK V EFN VS +SE
Sbjct: 249 AARPGGPPR-IRITGIDDMTSAYARGG--GLSIVGNRLAKLAKQFNVPFEFNSVSVSVSE 305
Query: 522 LNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNT 701
+ ++LG P E +AVNFAF L+ MPDESVST+N RD LLR VK L+P+VVTLVEQE NT
Sbjct: 306 VKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNT 365
Query: 702 NTAPFMAR 725
NTA F R
Sbjct: 366 NTAAFFPR 373
>TAIR9_protein||AT5G52510.1 | Symbols: | scarecrow-like transcription factor 8
(SCL8) | chr5:21307196-21309118 FORWARD
Length = 641
Score = 149 bits (376), Expect = 2e-036
Identities = 73/106 (68%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Frame = +3
Query: 411 DNGGEDRLRSVRQNLSQMAKNLGVGLEFNVV-SQKLSELNRESLGCEPDEPIAVNFAFKL 587
D+GGE+RL++V LSQ+ LG+ + FNVV S +L +LNRESLGC+PDE +AVN AFKL
Sbjct: 419 DDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAFKL 478
Query: 588 YSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMAR 725
Y +PDESV T+NPRDELLRRVKGL PRVVTLVEQE+N+NTAPF+ R
Sbjct: 479 YRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGR 524
Score = 139 bits (349), Expect = 2e-033
Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 10/143 (6%)
Frame = +3
Query: 3 AISEGKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRVNPVDNPPPVSELFTQEH 182
AI+EGK+E A EIL R++Q N NSE++L++FM +AL+SR+ PV+EL+ +EH
Sbjct: 275 AIAEGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI-----ASPVTELYGKEH 329
Query: 183 AGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALS 362
STQ+LYEL PCF LGF AANLAIL+A + HVIDFDIG+GGQY +LLR LS
Sbjct: 330 LISTQLLYELSPCFKLGFEAANLAILDAADNNDGGMMIPHVIDFDIGEGGQYVNLLRTLS 389
Query: 363 KRPNGKSS-----VVKITTVPDN 416
R NGKS VVKIT V +N
Sbjct: 390 TRRNGKSQSQNSPVVKITAVANN 412
>TAIR9_protein||AT4G17230.1 | Symbols: SCL13 | SCL13 (Scarecrow-like 13);
transcription factor | chr4:9661218-9662807 REVERSE
Length = 530
Score = 146 bits (367), Expect = 2e-035
Identities = 93/248 (37%), Positives = 139/248 (56%), Gaps = 17/248 (6%)
Frame = +3
Query: 12 EGKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRV----NPVDNPPPVSELFTQE 179
+G A L L Q+ + + QRL +MA L++R+ + + +E +E
Sbjct: 168 DGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGRE 227
Query: 180 HAGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRAL 359
VLYE+ P + + AN+ ILEA + +VH+IDF I QG QY L++ L
Sbjct: 228 LMSYMSVLYEICPYWKFAYTTANVEILEAIAGE----TRVHIIDFQIAQGSQYMFLIQEL 283
Query: 360 SKRPNGKSSVVKITTVPDN------GGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSE 521
+KRP G ++++T V D+ GG L V + L+ +A++ GV EF+ +
Sbjct: 284 AKRPGG-PPLLRVTGVDDSQSTYARGG--GLSLVGERLATLAQSCGVPFEFHDAIMSGCK 340
Query: 522 LNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNT 701
+ RE LG EP + VNF + L+ MPDESVS +N RD LL +K L+P++VTLVEQE NT
Sbjct: 341 VQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNT 400
Query: 702 NTAPFMAR 725
NT+PF++R
Sbjct: 401 NTSPFLSR 408
>TAIR9_protein||AT2G04890.1 | Symbols: SCL21 | SCL21 (SCARECROW-LIKE 21);
transcription factor | chr2:1720575-1721816 REVERSE
Length = 414
Score = 145 bits (365), Expect = 3e-035
Identities = 93/245 (37%), Positives = 137/245 (55%), Gaps = 12/245 (4%)
Frame = +3
Query: 3 AISEGKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRV----NPVDNPPPVSELF 170
A+SE A + L + + QRL +M L +R+ + + E
Sbjct: 60 AVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPE 119
Query: 171 TQEHAGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLL 350
+ E VL+E+ P F G+++AN AI EA ++ ++H+IDF IGQG Q+ L+
Sbjct: 120 SYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEE----RIHIIDFQIGQGSQWIALI 175
Query: 351 RALSKRPNGKSSVVKITTVPDNGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNR 530
+A + RP G + ++IT V D L +V++ L ++AK V FN VS+ E+
Sbjct: 176 QAFAARPGGAPN-IRITGVGDG---SVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEV 231
Query: 531 ESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTA 710
E+L E + VNFA+ L+ +PDESVS +N RD LLR VK L+P+VVTLVEQE NTNT+
Sbjct: 232 ENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTS 291
Query: 711 PFMAR 725
PF+ R
Sbjct: 292 PFLPR 296
>TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription factor |
chr1:18737398-18739547 REVERSE
Length = 598
Score = 144 bits (362), Expect = 6e-035
Identities = 97/242 (40%), Positives = 131/242 (54%), Gaps = 23/242 (9%)
Frame = +3
Query: 39 ILTRLTQVTNPRPNSEQRLLEFMASALKSRVNPVDN---------PPPVSELFTQEHAGS 191
++++L Q+ + QRL +M L +R+ + P EL T H
Sbjct: 249 LISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPTGPELLTYMH--- 305
Query: 192 TQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRP 371
+LYE P F G+ +AN AI EA + VH+IDF I QGGQ+ L+RAL RP
Sbjct: 306 --ILYEACPYFKFGYESANGAIAEAV----KNESFVHIIDFQISQGGQWVSLIRALGARP 359
Query: 372 NGKSSVVKITTVPDN----GGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRESL 539
G + V+IT + D + L V Q L ++A+ GV EF+ + +E+ E L
Sbjct: 360 GGPPN-VRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKL 418
Query: 540 GCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFM 719
G E +AVNF L+ MPDESV+ +N RD LLR VK L+P VVTLVEQE NTNTAPF+
Sbjct: 419 GVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFL 478
Query: 720 AR 725
R
Sbjct: 479 PR 480
>TAIR9_protein||AT5G66770.1 | Symbols: | scarecrow transcription factor family
protein | chr5:26660723-26662477 FORWARD
Length = 585
Score = 111 bits (276), Expect = 6e-025
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 11/244 (4%)
Frame = +3
Query: 6 ISEGKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRVNPVDNPPPVSELFTQEHA 185
IS+ A++ L ++ + + + +R+ + AL +R++P S T++
Sbjct: 227 ISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNSPATSSSSSSTEDLI 286
Query: 186 GSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSK 365
S + L + P + AN AILEAT +NK+H++DF I QG Q+ LL+AL+
Sbjct: 287 LSYKTLNDACPYSKFAHLTANQAILEAT----EKSNKIHIVDFGIVQGIQWPALLQALAT 342
Query: 366 RPNGKSSVVKITTVP----DNGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRE 533
R +GK + ++++ +P E L + L AK L + +F + + LN
Sbjct: 343 RTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGS 402
Query: 534 SLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAP 713
S +PDE +AVNF +LY + DE T D LR K L PRVVTL E E++ N
Sbjct: 403 SFRVDPDEVLAVNFMLQLYKLLDE---TPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVG 459
Query: 714 FMAR 725
F R
Sbjct: 460 FANR 463
>TAIR9_protein||AT5G59450.1 | Symbols: | scarecrow-like transcription factor 11
(SCL11) | chr5:23974808-23976640 FORWARD
Length = 611
Score = 97 bits (239), Expect = 1e-020
Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 14/228 (6%)
Frame = +3
Query: 30 AAEILTRLTQVTNPRPNSEQRLLEFMASALKSRVN-----PVDNPPPVSELFTQEHAGST 194
A + L + ++ + QRL + A AL++R+ PV NP P S + +
Sbjct: 243 ATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGNISPPVSNPFPSSTTSMVDILKAY 302
Query: 195 QVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPN 374
++ P + + AAN +I E LA ++T K+H++DF + G Q+ LLRALSKRP
Sbjct: 303 KLFVHTCPIYVTDYFAANKSIYE--LAMKAT--KLHIVDFGVLYGFQWPCLLRALSKRPG 358
Query: 375 GKSSVVKITTV--PDNG--GEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRESLG 542
G ++++T + P G DR+ + L + V EFN +++K + + L
Sbjct: 359 G-PPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEFNFIAKKWETITLDELM 417
Query: 543 CEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVE 686
P E VN +L PDE+VS D+PRD +L+ + + P + E
Sbjct: 418 INPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAE 465
>TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); transcription
factor | chr3:819636-821279 REVERSE
Length = 548
Score = 94 bits (232), Expect = 8e-020
Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 13/178 (7%)
Frame = +3
Query: 204 YELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKS 383
YE P AN AILEA +T +VHVID + QG Q+ L++AL+ RP G
Sbjct: 259 YESCPYLKFAHFTANQAILEAV----TTARRVHVIDLGLNQGMQWPALMQALALRPGGPP 314
Query: 384 SVVKITTV--PDNGGEDRLRSVRQNLSQMAKNLGVGLEF-NVVSQKLSELNRESLGCEPD 554
S ++T + P D L+ + L+Q A+N+GV EF + ++ LS+L E P+
Sbjct: 315 S-FRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPE 373
Query: 555 -EPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMAR 725
E + VN F+L+ + S S ++LL VK + P +VT+VEQE N N F+ R
Sbjct: 374 SETLVVNSVFELHRLLARSGSI----EKLLNTVKAIKPSIVTVVEQEANHNGIVFLDR 427
>TAIR9_protein||AT5G17490.1 | Symbols: RGL3 | RGL3 (RGA-LIKE PROTEIN 3);
transcription factor | chr5:5764316-5765887 REVERSE
Length = 524
Score = 84 bits (205), Expect = 1e-016
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 11/176 (6%)
Frame = +3
Query: 204 YELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKS 383
Y+ P AN AILEA +T+ VHVID + QG Q+ L++AL+ RP G
Sbjct: 232 YDSCPYLKFAHFTANQAILEAV----TTSRVVHVIDLGLNQGMQWPALMQALALRPGGPP 287
Query: 384 SVVKITTVPDNGGEDRLRSVRQNLSQMAKNLGVGLEFN-VVSQKLSELNRESLGCEPD-E 557
S ++T V + + ++ + L+Q+A+ +GV +FN + +++LS+L + + E
Sbjct: 288 S-FRLTGVGNPSNREGIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESE 346
Query: 558 PIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMAR 725
+ VN F+L+ + +S ++LL VK + P +VT+VEQE N N F+ R
Sbjct: 347 TLVVNSVFELHPV----LSQPGSIEKLLATVKAVKPGLVTVVEQEANHNGDVFLDR 398
>TAIR9_protein||AT1G66350.1 | Symbols: RGL1, RGL | RGL1 (RGA-LIKE 1);
transcription factor | chr1:24748327-24749862 FORWARD
Length = 512
Score = 82 bits (200), Expect = 4e-016
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Frame = +3
Query: 204 YELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKS 383
YE P AN AILE +T KVHVID + G Q+ L++AL+ RPNG
Sbjct: 227 YESCPYLKFAHFTANQAILEVF----ATAEKVHVIDLGLNHGLQWPALIQALALRPNGPP 282
Query: 384 SVVKITTVPDNGGEDRLRSVRQNLSQMAKNLGVGLEF-NVVSQKLSELNRESLGCEPD-E 557
++T + + + ++ V L Q+A +GV EF ++ LS+L E L P E
Sbjct: 283 D-FRLTGIGYSLTD--IQEVGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLE 339
Query: 558 PIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMAR 725
+AVN F+L+ + ++ D+ L +K + P ++T+VEQE N N F+ R
Sbjct: 340 SVAVNSVFELHRL----LAHPGSIDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDR 391
>TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1);
protein binding / transcription factor | chr2:255581-257344 REVERSE
Length = 588
Score = 77 bits (188), Expect = 1e-014
Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 26/251 (10%)
Frame = +3
Query: 3 AISEGKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRVNPVDNPPPVSELFTQEH 182
AI + A ++ ++ + + + +++ + A AL R+ + PP +++ +H
Sbjct: 231 AIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYRLS--PPQNQI---DH 285
Query: 183 AGSTQV---LYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLR 353
S + YE P AN AILEA +VHVIDF + QG Q+ L++
Sbjct: 286 CLSDTLQMHFYETCPYLKFAHFTANQAILEAF----EGKKRVHVIDFSMNQGLQWPALMQ 341
Query: 354 ALSKRPNGKSSVVKITTV----PDNGGEDRLRSVRQNLSQMAKNLGVGLEF-NVVSQKLS 518
AL+ R G + ++T + PDN D L V L+Q+A+ + V E+ V+ L+
Sbjct: 342 ALALREGGPPT-FRLTGIGPPAPDN--SDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLA 398
Query: 519 ELNRESLGCEPD--EPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQE 692
+L+ L P E +AVN F+L+ + + +++L VK + P + T+VEQE
Sbjct: 399 DLDASMLELRPSDTEAVAVNSVFELHKL----LGRPGGIEKVLGVVKQIKPVIFTVVEQE 454
Query: 693 LNTNTAPFMAR 725
N N F+ R
Sbjct: 455 SNHNGPVFLDR 465
>TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELLIC ACID
INSENSITIVE); transcription factor | chr1:5149414-5151015 FORWARD
Length = 534
Score = 76 bits (185), Expect = 2e-014
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Frame = +3
Query: 204 YELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKS 383
YE P AN AILEA + +VHVIDF + QG Q+ L++AL+ RP G
Sbjct: 244 YETCPYLKFAHFTANQAILEAFQGKK----RVHVIDFSMSQGLQWPALMQALALRPGG-P 298
Query: 384 SVVKITTV----PDNGGEDRLRSVRQNLSQMAKNLGVGLEF-NVVSQKLSELNRESLGCE 548
V ++T + PDN D L V L+ +A+ + V E+ V+ L++L+ L
Sbjct: 299 PVFRLTGIGPPAPDN--FDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELR 356
Query: 549 PD--EPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMA 722
P E +AVN F+L+ + + D++L V + P + T+VEQE N N+ F+
Sbjct: 357 PSEIESVAVNSVFELHKL----LGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLD 412
Query: 723 R 725
R
Sbjct: 413 R 413
>TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transcription factor
| chr1:18678177-18679625 REVERSE
Length = 483
Score = 66 bits (160), Expect = 2e-011
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 14/200 (7%)
Frame = +3
Query: 15 GKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRV-------NPVDNPPPVSELFT 173
G + A L +L+ + +P ++ QR+ + AL +R+ N
Sbjct: 68 GSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNV 127
Query: 174 QEHAGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLR 353
E ++ +E+ P + ++ N AILEA ++ VHVID D + Q+ LL+
Sbjct: 128 SEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGEK----MVHVIDLDASEPAQWLALLQ 183
Query: 354 ALSKRPNGKSSVVKITTVPDNGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRE 533
A + RP G ++IT V + ++ L + L + A+ L + +FN V +L LN E
Sbjct: 184 AFNSRPEGPPH-LRITGV--HHQKEVLEQMAHRLIEEAEKLDIPFQFNPVVSRLDCLNVE 240
Query: 534 SLGCEPDEPIAVNFAFKLYS 593
L + E +AV+ +L++
Sbjct: 241 QLRVKTGEALAVSSVLQLHT 260
>TAIR9_protein||AT3G46600.1 | Symbols: | scarecrow transcription factor family
protein | chr3:17158048-17159799 FORWARD
Length = 584
Score = 65 bits (156), Expect = 5e-011
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)
Frame = +3
Query: 216 PCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKSSVVK 395
P + + AN I E LA ++TT +H+IDF I G Q+ L++ALSKR G +++
Sbjct: 293 PTLIMCYFTANRTINE--LASKATT--LHIIDFGILYGFQWPCLIQALSKRDIG-PPLLR 347
Query: 396 ITTV--PDNG--GEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRESLGCEPDEPI 563
+T + P +G +R+ + L + V E++ +++ + + L E
Sbjct: 348 VTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETT 407
Query: 564 AVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPF 716
VN +L PDE+VS ++PRD L+ + + P + E T +PF
Sbjct: 408 VVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEIN-GTYNSPF 457
>TAIR9_protein||AT3G46600.2 | Symbols: | scarecrow transcription factor family
protein | chr3:17158379-17159799 FORWARD
Length = 454
Score = 65 bits (156), Expect = 5e-011
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)
Frame = +3
Query: 216 PCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKSSVVK 395
P + + AN I E LA ++TT +H+IDF I G Q+ L++ALSKR G +++
Sbjct: 163 PTLIMCYFTANRTINE--LASKATT--LHIIDFGILYGFQWPCLIQALSKRDIG-PPLLR 217
Query: 396 ITTV--PDNG--GEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRESLGCEPDEPI 563
+T + P +G +R+ + L + V E++ +++ + + L E
Sbjct: 218 VTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETT 277
Query: 564 AVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPF 716
VN +L PDE+VS ++PRD L+ + + P + E T +PF
Sbjct: 278 VVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEIN-GTYNSPF 327
>TAIR9_protein||AT3G46600.3 | Symbols: | scarecrow transcription factor family
protein | chr3:17158052-17159799 FORWARD
Length = 552
Score = 65 bits (156), Expect = 5e-011
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)
Frame = +3
Query: 216 PCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKSSVVK 395
P + + AN I E LA ++TT +H+IDF I G Q+ L++ALSKR G +++
Sbjct: 261 PTLIMCYFTANRTINE--LASKATT--LHIIDFGILYGFQWPCLIQALSKRDIG-PPLLR 315
Query: 396 ITTV--PDNG--GEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRESLGCEPDEPI 563
+T + P +G +R+ + L + V E++ +++ + + L E
Sbjct: 316 VTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETT 375
Query: 564 AVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPF 716
VN +L PDE+VS ++PRD L+ + + P + E T +PF
Sbjct: 376 VVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEIN-GTYNSPF 425
>TAIR9_protein||AT4G00150.1 | Symbols: | scarecrow-like transcription factor 6
(SCL6) | chr4:57429-59105 REVERSE
Length = 559
Score = 58 bits (139), Expect = 5e-009
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 24/242 (9%)
Frame = +3
Query: 6 ISEGKSEAAAEILTRLT-QVTNPRPNSEQRLLEFMASALKSRVNPVDNP-PPVSELFTQE 179
+ E + A IL RL Q+++P +R + AL + ++ V P S +F
Sbjct: 215 VIESDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLHNVSQTLNPYSLIF--- 271
Query: 180 HAGSTQVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRAL 359
+ + E+ P +N A+LE+ +++H+IDFDIG GGQ+ L++ L
Sbjct: 272 KIAAYKSFSEISPVLQFANFTSNQALLESF----HGFHRLHIIDFDIGYGGQWASLMQEL 327
Query: 360 SKRPNGKSSVVKITTV--PDNGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRE 533
R N +KIT P N + L + NL A + + L+ V+S L L
Sbjct: 328 VLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLS--LDLLGSI 385
Query: 534 SL-GCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTA 710
S E +AVN S ++ + +LR VK L+P ++ ++
Sbjct: 386 SWPNSSEKEAVAVNI----------SAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDL 435
Query: 711 PF 716
PF
Sbjct: 436 PF 437
>TAIR9_protein||AT2G37650.1 | Symbols: | scarecrow-like transcription factor 9
(SCL9) | chr2:15792623-15794779 FORWARD
Length = 719
Score = 57 bits (137), Expect = 8e-009
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Frame = +3
Query: 195 QVLYELIPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPN 374
Q+ P L + N I + + +VHVIDF I G Q+ L+ S +
Sbjct: 422 QLFLACCPFRKLSYFITNKTIRDLV----GNSQRVHVIDFGILYGFQWPTLIHRFSMYGS 477
Query: 375 GKSSVVKITTV----PDNGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSELNRESLG 542
K V+IT + P R+ Q L+ AK GV E+ +++K + E L
Sbjct: 478 PK---VRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLD 534
Query: 543 CEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAP 665
+ DE VN ++ ++ DESV ++ RD +L + + P
Sbjct: 535 IDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINP 575
>TAIR9_protein||AT3G60630.1 | Symbols: | scarecrow transcription factor family
protein | chr3:22410496-22412367 REVERSE
Length = 624
Score = 56 bits (134), Expect = 2e-008
Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Frame = +3
Query: 66 NPRP---NSEQRLLEFMASALK-SRVNPVDNPPPVSELFTQEHAGSTQVLYELIPCFNLG 233
NP+P + + E + S L+ S ++P PP + +F + + E P
Sbjct: 287 NPKPPFHRAASYITEALHSLLQDSSLSPPSLSPPQNLIF---RIAAYRAFSETSPFLQFV 343
Query: 234 FIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKSSV--VKIT-- 401
AN ILE+ +++H++DFDIG GGQ+ L++ L+ + N SS +KIT
Sbjct: 344 NFTANQTILESF----EGFDRIHIVDFDIGYGGQWASLIQELAGKRNRSSSAPSLKITAF 399
Query: 402 ----TVPDNGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKL--------SELNRESLGC 545
TV D E LR +NL A GV E +++ ++ L R S
Sbjct: 400 ASPSTVSD---EFELRFTEENLRSFAGETGVSFEIELLNMEILLNPTYWPLSLFRSS--- 453
Query: 546 EPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELN-TNTAPF 716
E IAVN VS P +LR +K ++P VV ++ + N APF
Sbjct: 454 -EKEAIAVNLPI------SSMVSGYLPL--ILRFLKQISPNVVVCSDRSCDRNNDAPF 502
>TAIR9_protein||AT4G36710.1 | Symbols: | transcription factor |
chr4:17306060-17307520 FORWARD
Length = 487
Score = 55 bits (132), Expect = 3e-008
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Frame = +3
Query: 213 IPCFNLGFIAANLAILEATLADQSTTNKVHVIDFDIGQGGQYRHLLRALSKRPNGKSSVV 392
IP F+ AN AIL+ +L+ QS++ VHV+DF+IG GGQY L+R ++++ + +
Sbjct: 207 IPLFS--HFTANQAILD-SLSSQSSSPFVHVVDFEIGFGGQYASLMREITEK-SVSGGFL 262
Query: 393 KITTVPDNGGEDRLRSVRQNLSQMAKNLGVGLEFNVVSQKLSEL 524
++T V R V++NL+Q A + + + V K E+
Sbjct: 263 RVTAVVAEECAVETRLVKENLTQFAAEMKIRFQIEFVLMKTFEM 306
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,680,256
Number of Sequences: 33410
Number of Extensions: 1097680256
Number of Successful Extensions: 56500652
Number of sequences better than 0.0: 0
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