BLASTX 7.6.2
Query= RU04281 /QuerySize=549
(548 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G17870.1 | Symbols: | cold-shock DNA-binding ... 103 1e-022
TAIR9_protein||AT4G36020.1 | Symbols: CSDP1 | CSDP1 (cold shock ... 101 4e-022
TAIR9_protein||AT4G38680.1 | Symbols: GRP2, CSDP2, CSP2, ATCSP2 ... 99 1e-021
TAIR9_protein||AT2G21060.1 | Symbols: ATGRP2B | ATGRP2B (GLYCINE... 96 9e-021
>TAIR9_protein||AT2G17870.1 | Symbols: | cold-shock DNA-binding family protein
| chr2:7764276-7765181 REVERSE
Length = 302
Score = 103 bits (255), Expect = 1e-022
Identities = 48/77 (62%), Positives = 60/77 (77%)
Frame = +2
Query: 47 RSTGVVKWFNDTKGFGFITPDNNTEDLFVHQSSIKSDGFRTVAEGDAVEFLIAVGEDGKT 226
RS G V WF+D KG+GFITPD+ E+LFVHQSSI SDGFR++ G++VE+ IA+G DGKT
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69
Query: 227 KAVDVTGPNGAPLPGKE 277
KA++VT P G L KE
Sbjct: 70 KAIEVTAPGGGSLNKKE 86
>TAIR9_protein||AT4G36020.1 | Symbols: CSDP1 | CSDP1 (cold shock domain protein
1); RNA binding / double-stranded DNA binding / nucleic acid binding /
single-stranded DNA binding | chr4:17043443-17044342 REVERSE
Length = 300
Score = 101 bits (250), Expect = 4e-022
Identities = 47/73 (64%), Positives = 57/73 (78%)
Frame = +2
Query: 47 RSTGVVKWFNDTKGFGFITPDNNTEDLFVHQSSIKSDGFRTVAEGDAVEFLIAVGEDGKT 226
RSTG V WFN +KG+GFITPD+ + +LFVHQSSI S+G+R++ GDAVEF I G DGKT
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69
Query: 227 KAVDVTGPNGAPL 265
KAV+VT P G L
Sbjct: 70 KAVNVTAPGGGSL 82
>TAIR9_protein||AT4G38680.1 | Symbols: GRP2, CSDP2, CSP2, ATCSP2 | GRP2 (GLYCINE
RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic
acid binding / single-stranded DNA binding | chr4:18072240-18072851
REVERSE
Length = 204
Score = 99 bits (246), Expect = 1e-021
Identities = 44/76 (57%), Positives = 60/76 (78%)
Frame = +2
Query: 44 ERSTGVVKWFNDTKGFGFITPDNNTEDLFVHQSSIKSDGFRTVAEGDAVEFLIAVGEDGK 223
ER G VKWF+ KGFGFITPD+ +DLFVHQSSI+S+GFR++A +AVEF + + + +
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 224 TKAVDVTGPNGAPLPG 271
KA+DV+GP+GAP+ G
Sbjct: 69 PKAIDVSGPDGAPVQG 84
>TAIR9_protein||AT2G21060.1 | Symbols: ATGRP2B | ATGRP2B (GLYCINE-RICH PROTEIN
2B); DNA binding / nucleic acid binding / zinc ion binding |
chr2:9036983-9037588 REVERSE
Length = 202
Score = 96 bits (238), Expect = 9e-021
Identities = 43/82 (52%), Positives = 61/82 (74%)
Frame = +2
Query: 26 VSRMAEERSTGVVKWFNDTKGFGFITPDNNTEDLFVHQSSIKSDGFRTVAEGDAVEFLIA 205
V+ +R G VKWF+ KGFGFITP + +DLFVHQSSI+S+GFR++A ++VEF +
Sbjct: 7 VNMSGGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVE 66
Query: 206 VGEDGKTKAVDVTGPNGAPLPG 271
V G+ KA++V+GP+GAP+ G
Sbjct: 67 VDNSGRPKAIEVSGPDGAPVQG 88
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,680,256
Number of Sequences: 33410
Number of Extensions: 1097680256
Number of Successful Extensions: 56500652
Number of sequences better than 0.0: 0
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