BLASTX 7.6.2
Query= RU04335 /QuerySize=852
(851 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 117 1e-026
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 117 1e-026
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 117 1e-026
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 99 4e-021
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 99 4e-021
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 96 3e-020
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 90 1e-018
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 90 1e-018
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 90 1e-018
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 87 1e-017
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 87 1e-017
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 87 1e-017
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 84 8e-017
TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HM... 55 5e-008
TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcripti... 53 2e-007
TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HM... 51 9e-007
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 117 bits (291), Expect = 1e-026
Identities = 59/113 (52%), Positives = 69/113 (61%)
Frame = -1
Query: 746 MKGGKSNTKKADSKLAVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFRKQFNKEN 567
MKG KS T+ SKL+V DPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 566 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 408
P N +S++EKAPYVAK++KRKVEYEK +KAYN K EG
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 117 bits (291), Expect = 1e-026
Identities = 59/113 (52%), Positives = 69/113 (61%)
Frame = -1
Query: 746 MKGGKSNTKKADSKLAVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFRKQFNKEN 567
MKG KS T+ SKL+V DPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 566 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 408
P N +S++EKAPYVAK++KRKVEYEK +KAYN K EG
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 117 bits (291), Expect = 1e-026
Identities = 59/113 (52%), Positives = 69/113 (61%)
Frame = -1
Query: 746 MKGGKSNTKKADSKLAVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFRKQFNKEN 567
MKG KS T+ SKL+V DPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 566 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 408
P N +S++EKAPYVAK++KRKVEYEK +KAYN K EG
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 99 bits (244), Expect = 4e-021
Identities = 47/80 (58%), Positives = 56/80 (70%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPNKPKRP+SAFFVFME+FR + +E+P N +S++EKAPYVAK+D
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 467 KRKVEYEKLMKAYNMKQAEG 408
KRKVEYEK MKAYN K EG
Sbjct: 91 KRKVEYEKNMKAYNKKLEEG 110
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 99 bits (244), Expect = 4e-021
Identities = 47/80 (58%), Positives = 56/80 (70%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPNKPKRP+SAFFVFME+FR + +E+P N +S++EKAPYVAK+D
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 467 KRKVEYEKLMKAYNMKQAEG 408
KRKVEYEK MKAYN K EG
Sbjct: 91 KRKVEYEKNMKAYNKKLEEG 110
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 96 bits (236), Expect = 3e-020
Identities = 45/76 (59%), Positives = 54/76 (71%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPNKPKRP+SAFFVFME+FR + +E+P N +S++EKAPYVAK+D
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 467 KRKVEYEKLMKAYNMK 420
KRKVEYEK MKAYN K
Sbjct: 91 KRKVEYEKNMKAYNKK 106
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 90 bits (222), Expect = 1e-018
Identities = 41/80 (51%), Positives = 53/80 (66%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPN+PKRP SAFFVF+E+FRK+FN NPNN M++ +KAPYVAK++
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 467 KRKVEYEKLMKAYNMKQAEG 408
RK EY K ++ YN+K A G
Sbjct: 91 SRKTEYIKNVQQYNLKLASG 110
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 90 bits (222), Expect = 1e-018
Identities = 41/80 (51%), Positives = 53/80 (66%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPN+PKRP SAFFVF+E+FRK+FN NPNN M++ +KAPYVAK++
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 467 KRKVEYEKLMKAYNMKQAEG 408
RK EY K ++ YN+K A G
Sbjct: 91 SRKTEYIKNVQQYNLKLASG 110
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 90 bits (222), Expect = 1e-018
Identities = 41/80 (51%), Positives = 53/80 (66%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPN+PKRP SAFFVF+E+FRK+FN NPNN M++ +KAPYVAK++
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 467 KRKVEYEKLMKAYNMKQAEG 408
RK EY K ++ YN+K A G
Sbjct: 91 SRKTEYIKNVQQYNLKLASG 110
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 87 bits (214), Expect = 1e-017
Identities = 44/81 (54%), Positives = 49/81 (60%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPNKPKR SAFFVF+E+FR F KENPN MS+AEKAPY K+
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 467 KRKVEYEKLMKAYNMKQAEGN 405
KRK EYEK M AYN EG+
Sbjct: 109 KRKAEYEKQMDAYNKNLEEGS 129
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 87 bits (214), Expect = 1e-017
Identities = 44/81 (54%), Positives = 49/81 (60%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPNKPKR SAFFVF+E+FR F KENPN MS+AEKAPY K+
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 467 KRKVEYEKLMKAYNMKQAEGN 405
KRK EYEK M AYN EG+
Sbjct: 109 KRKAEYEKQMDAYNKNLEEGS 129
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 87 bits (214), Expect = 1e-017
Identities = 44/81 (54%), Positives = 49/81 (60%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPNKPKR SAFFVF+E+FR F KENPN MS+AEKAPY K+
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 467 KRKVEYEKLMKAYNMKQAEGN 405
KRK EYEK M AYN EG+
Sbjct: 109 KRKAEYEKQMDAYNKNLEEGS 129
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 84 bits (207), Expect = 8e-017
Identities = 38/81 (46%), Positives = 51/81 (62%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPN+PK+P S FFVF+++FRK+FN NP+N M+E E+AP+VAKS
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQ 89
Query: 467 KRKVEYEKLMKAYNMKQAEGN 405
+K EY M+ YNM+ A GN
Sbjct: 90 SKKTEYAVTMQQYNMELANGN 110
>TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:12390228-12392516 FORWARD
Length = 457
Score = 55 bits (131), Expect = 5e-008
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = -1
Query: 647 DPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSD 468
DPNKPK+PAS++F+F ++ RK+ +E P +SE EK Y K+
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERP-GTNNATVTALISLKWKELSEEEKQVYNGKAA 433
Query: 467 KRKVEYEKLMKAYNMKQA 414
K Y+K ++AYN K A
Sbjct: 434 KLMEAYKKEVEAYNKKSA 451
>TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcription factor |
chr5:7888712-7890111 REVERSE
Length = 242
Score = 53 bits (126), Expect = 2e-007
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = -1
Query: 641 NKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKR 462
NKPKRP +AFF+FM +FRK F E+ N ++E EK Y+ K+ +
Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAEL 171
Query: 461 KVEYEKLMKAYNMKQAE 411
K EY K +++ + + E
Sbjct: 172 KAEYNKSLESNDADEEE 188
>TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 152
Score = 51 bits (120), Expect = 9e-007
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = -1
Query: 635 PKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKV 456
PK+PA+AFF F+++FRKQ+ +ENP+ M+ EK Y + +++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 455 EYEKLMKAYNMKQAEG 408
E+ + M Y + G
Sbjct: 123 EFHRAMTEYTKRMESG 138
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,680,256
Number of Sequences: 33410
Number of Extensions: 1097680256
Number of Successful Extensions: 56500652
Number of sequences better than 0.0: 0
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