BLASTX 7.6.2
Query= RU04514 /QuerySize=356
(355 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 62 5e-011
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 62 5e-011
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 62 5e-011
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 58 8e-010
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 58 8e-010
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 58 8e-010
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 55 5e-009
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 55 5e-009
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 55 5e-009
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 49 4e-007
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 48 1e-006
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 48 1e-006
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 48 1e-006
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 62 bits (149), Expect = 5e-011
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3
Query: 231 KERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+E ++AKKDPNKPKR PSAFFVFL FR FKK+NPNV
Sbjct: 38 RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNV 78
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 62 bits (149), Expect = 5e-011
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3
Query: 231 KERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+E ++AKKDPNKPKR PSAFFVFL FR FKK+NPNV
Sbjct: 38 RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNV 78
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 62 bits (149), Expect = 5e-011
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3
Query: 231 KERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+E ++AKKDPNKPKR PSAFFVFL FR FKK+NPNV
Sbjct: 38 RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNV 78
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 58 bits (139), Expect = 8e-010
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +3
Query: 237 RPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
R + ++ KKDPN+PKRPPSAFFVFL FR+EF NPN
Sbjct: 22 RKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPN 59
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 58 bits (139), Expect = 8e-010
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +3
Query: 237 RPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
R + ++ KKDPN+PKRPPSAFFVFL FR+EF NPN
Sbjct: 22 RKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPN 59
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 58 bits (139), Expect = 8e-010
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +3
Query: 237 RPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
R + ++ KKDPN+PKRPPSAFFVFL FR+EF NPN
Sbjct: 22 RKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPN 59
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 55 bits (132), Expect = 5e-009
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +3
Query: 228 AKERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
AK + A KDPNKPKRP SAFFVF+ FRE FKK+NP
Sbjct: 22 AKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENP 61
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 55 bits (132), Expect = 5e-009
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +3
Query: 228 AKERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
AK + A KDPNKPKRP SAFFVF+ FRE FKK+NP
Sbjct: 22 AKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENP 61
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 55 bits (132), Expect = 5e-009
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +3
Query: 228 AKERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
AK + A KDPNKPKRP SAFFVF+ FRE FKK+NP
Sbjct: 22 AKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENP 61
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 49 bits (116), Expect = 4e-007
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 261 KDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
KDPN+PK+PPS FFVFL FR+EF NP+
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPD 58
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 48 bits (112), Expect = 1e-006
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 231 KERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
K + A KDPNKPKRP SAFFVF+ FR +K+++P
Sbjct: 20 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHP 58
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 48 bits (112), Expect = 1e-006
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 231 KERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
K + A KDPNKPKRP SAFFVF+ FR +K+++P
Sbjct: 20 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHP 58
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 48 bits (112), Expect = 1e-006
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 231 KERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
K + A KDPNKPKRP SAFFVF+ FR +K+++P
Sbjct: 20 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHP 58
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,153,850,919
Number of Sequences: 33410
Number of Extensions: 1153850919
Number of Successful Extensions: 61422046
Number of sequences better than 0.0: 0
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