BLASTX 7.6.2
Query= RU04534 /QuerySize=245
(244 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G22760.1 | Symbols: | PHD finger family prote... 109 4e-025
TAIR9_protein||AT5G35210.1 | Symbols: | peptidase M50 family pr... 102 7e-023
TAIR9_protein||AT5G35210.2 | Symbols: | peptidase M50 family pr... 102 7e-023
TAIR9_protein||AT5G12400.1 | Symbols: | PHD finger transcriptio... 77 1e-015
TAIR9_protein||AT1G05380.1 | Symbols: | DNA binding | chr1:1577... 54 1e-008
TAIR9_protein||AT1G05380.2 | Symbols: | DNA binding | chr1:1577... 54 1e-008
TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REM... 51 1e-007
TAIR9_protein||AT3G14980.1 | Symbols: | PHD finger transcriptio... 50 2e-007
TAIR9_protein||AT3G01460.1 | Symbols: MBD9, ATMBD9 | MBD9; DNA b... 50 2e-007
TAIR9_protein||AT5G36740.1 | Symbols: | PHD finger family prote... 48 9e-007
TAIR9_protein||AT5G36670.1 | Symbols: | PHD finger family prote... 48 9e-007
TAIR9_protein||AT5G58610.1 | Symbols: | PHD finger transcriptio... 48 9e-007
TAIR9_protein||AT2G19260.1 | Symbols: | ELM2 domain-containing ... 46 3e-006
>TAIR9_protein||AT5G22760.1 | Symbols: | PHD finger family protein |
chr5:7571635-7577662 FORWARD
Length = 1567
Score = 109 bits (271), Expect = 4e-025
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECTINKIGPTITVGTSVKGAQLFGIDAYEH 63
LCCDGCP AYH+RCIGV+K+ IP+G WYCPECTI K+GPT+ TS++GA FG+D +
Sbjct: 426 LCCDGCPLAYHSRCIGVVKMYIPDGPWYCPECTIKKMGPTVVYKTSLRGAVYFGVDPHGR 485
Query: 62 IFMGTCKPL 36
+F+GTC L
Sbjct: 486 LFLGTCNLL 494
>TAIR9_protein||AT5G35210.1 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2 protease
family protein | chr5:13474499-13482238 REVERSE
Length = 1577
Score = 102 bits (252), Expect = 7e-023
Identities = 41/64 (64%), Positives = 52/64 (81%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECTINKIGPTITVGTSVKGAQLFGIDAYEH 63
LCCDGCP AYH+RCIGV+K+ IP+G W+CPECTINK GP I GTS++GA FG+D +
Sbjct: 424 LCCDGCPLAYHSRCIGVVKMYIPDGPWFCPECTINKKGPKIAHGTSLRGAVQFGMDPHGR 483
Query: 62 IFMG 51
+F+G
Sbjct: 484 LFLG 487
>TAIR9_protein||AT5G35210.2 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2 protease
family protein | chr5:13476213-13482238 REVERSE
Length = 1410
Score = 102 bits (252), Expect = 7e-023
Identities = 41/64 (64%), Positives = 52/64 (81%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECTINKIGPTITVGTSVKGAQLFGIDAYEH 63
LCCDGCP AYH+RCIGV+K+ IP+G W+CPECTINK GP I GTS++GA FG+D +
Sbjct: 424 LCCDGCPLAYHSRCIGVVKMYIPDGPWFCPECTINKKGPKIAHGTSLRGAVQFGMDPHGR 483
Query: 62 IFMG 51
+F+G
Sbjct: 484 LFLG 487
>TAIR9_protein||AT5G12400.1 | Symbols: | PHD finger transcription factor,
putative | chr5:4013813-4020909 FORWARD
Length = 1596
Score = 77 bits (189), Expect = 1e-015
Identities = 27/66 (40%), Positives = 42/66 (63%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECTINKIGPTITVGTSVKGAQLFGIDAYEH 63
LCCDGCP+AYH++C+G+ +PEG WYCPEC ++ P + ++GA+ ID +
Sbjct: 621 LCCDGCPAAYHSKCVGLASHLLPEGDWYCPECAFDRRAPGLKPDKQIRGAEFIEIDPHGR 680
Query: 62 IFMGTC 45
+ +C
Sbjct: 681 KYYSSC 686
>TAIR9_protein||AT1G05380.1 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1139
Score = 54 bits (129), Expect = 1e-008
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECT 144
+CCDGCPS YH C+G+ L P G W+CP CT
Sbjct: 638 ICCDGCPSTYHQNCLGMQVL--PSGDWHCPNCT 668
>TAIR9_protein||AT1G05380.2 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1139
Score = 54 bits (129), Expect = 1e-008
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECT 144
+CCDGCPS YH C+G+ L P G W+CP CT
Sbjct: 638 ICCDGCPSTYHQNCLGMQVL--PSGDWHCPNCT 668
>TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/ nucleic acid
binding / protein binding / zinc ion binding | chr5:18083659-18092162
REVERSE
Length = 2243
Score = 51 bits (121), Expect = 1e-007
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECTIN 138
LCCD CP YHT C+ IP G W CP+C+ N
Sbjct: 88 LCCDSCPRTYHTACLNPPLKRIPNGKWICPKCSPN 122
>TAIR9_protein||AT3G14980.1 | Symbols: | PHD finger transcription factor,
putative | chr3:5039931-5044811 REVERSE
Length = 1190
Score = 50 bits (118), Expect = 2e-007
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECT 144
+CCD CPS +H C+ + L PEGSWYC CT
Sbjct: 739 ICCDNCPSTFHQACLSMQVL--PEGSWYCSSCT 769
>TAIR9_protein||AT3G01460.1 | Symbols: MBD9, ATMBD9 | MBD9; DNA binding /
methyl-CpG binding | chr3:173316-182038 FORWARD
Length = 2177
Score = 50 bits (118), Expect = 2e-007
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECTINK 135
L CD C + YHT C+ + IP+G+WYCP C I K
Sbjct: 1303 LLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCVIAK 1338
>TAIR9_protein||AT5G36740.1 | Symbols: | PHD finger family protein |
chr5:14460790-14465727 FORWARD
Length = 1180
Score = 48 bits (113), Expect = 9e-007
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECT 144
+CCDGCPS +H C+ + K P G+WYC C+
Sbjct: 663 ICCDGCPSTFHQSCLDIKK--FPSGAWYCYNCS 693
>TAIR9_protein||AT5G36670.1 | Symbols: | PHD finger family protein |
chr5:14401491-14406427 FORWARD
Length = 1194
Score = 48 bits (113), Expect = 9e-007
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECT 144
+CCDGCPS +H C+ + K P G+WYC C+
Sbjct: 663 ICCDGCPSTFHQSCLDIKK--FPSGAWYCYNCS 693
>TAIR9_protein||AT5G58610.1 | Symbols: | PHD finger transcription factor,
putative | chr5:23686771-23691053 REVERSE
Length = 1066
Score = 48 bits (113), Expect = 9e-007
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPEGSWYCPECTINKIGPTITVGTSVKGAQ 90
+ CDGCPSA+H C+G+ +P+G W+C C G TS +
Sbjct: 707 ILCDGCPSAFHANCLGLE--DVPDGDWFCQSCCCGACGQFFLKTTSTNAKE 755
>TAIR9_protein||AT2G19260.1 | Symbols: | ELM2 domain-containing protein / PHD
finger family protein | chr2:8357331-8359931 FORWARD
Length = 632
Score = 46 bits (108), Expect = 3e-006
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 242 LCCDGCPSAYHTRCIGVMKLSIPE-GSWYCPECTINKIGPTITVG 111
L CD C AYHTRC GV + E W CP C N+ T T G
Sbjct: 425 LICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCLKNQSSKTKTKG 469
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,153,850,919
Number of Sequences: 33410
Number of Extensions: 1153850919
Number of Successful Extensions: 61422046
Number of sequences better than 0.0: 0
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