BLASTX 7.6.2
Query= RU04790 /QuerySize=335
(334 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G70600.1 | Symbols: | structural constituent ... 193 3e-050
TAIR9_protein||AT1G23290.1 | Symbols: RPL27A, RPL27AB | RPL27AB;... 184 7e-048
TAIR9_protein||AT1G12960.1 | Symbols: | 60S ribosomal protein L... 60 3e-010
>TAIR9_protein||AT1G70600.1 | Symbols: | structural constituent of ribosome |
chr1:26621168-26621608 REVERSE
Length = 147
Score = 193 bits (488), Expect = 3e-050
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFHCPIVNLEKLWSMVPQEVKDKATK 325
FHKLRNKF CPIVNL+KLWS+VP++VK K+TK
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTK 92
>TAIR9_protein||AT1G23290.1 | Symbols: RPL27A, RPL27AB | RPL27AB; structural
constituent of ribosome | chr1:8263007-8263447 FORWARD
Length = 147
Score = 184 bits (467), Expect = 7e-048
Identities = 81/92 (88%), Positives = 87/92 (94%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M T KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFHCPIVNLEKLWSMVPQEVKDKATK 325
FHKLRNKF CPIVNL+KLWS+VP++VK K++K
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSK 92
>TAIR9_protein||AT1G12960.1 | Symbols: | 60S ribosomal protein L27A (RPL27aA) |
chr1:4422707-4423155 REVERSE
Length = 105
Score = 60 bits (143), Expect = 3e-010
Identities = 30/50 (60%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAG-GMHHHRILFDKYH 196
MTT KK R R HVS GHGR GKHRK PG RGNAG GM + L +K++
Sbjct: 1 MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFY 50
Score = 57 bits (136), Expect = 2e-009
Identities = 27/35 (77%), Positives = 29/35 (82%), Gaps = 2/35 (5%)
Frame = +2
Query: 197 PGYFGK--VGMRYFHKLRNKFHCPIVNLEKLWSMV 295
PG G VGMRYFHKLRNKF+C IVNL+KLWSMV
Sbjct: 29 PGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV 63
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,211,404,566
Number of Sequences: 33410
Number of Extensions: 1211404566
Number of Successful Extensions: 66311372
Number of sequences better than 0.0: 0
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