BLASTX 7.6.2
Query= RU04798 /QuerySize=1058
(1057 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, T... 257 2e-068
TAIR9_protein||AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, T... 257 2e-068
TAIR9_protein||AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, T... 257 2e-068
TAIR9_protein||AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF1... 236 2e-062
>TAIR9_protein||AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/
transcription factor/ transcription regulator | chr5:7016704-7021504
REVERSE
Length = 1166
Score = 257 bits (654), Expect = 2e-068
Identities = 149/268 (55%), Positives = 185/268 (69%), Gaps = 18/268 (6%)
Frame = -2
Query: 786 SSNNFSASPMMQAQHVSSIQQQNQHKPV-TAIRSHSNLTE-GDGPSCSTSPSTNNCQVSS 613
S N S + Q + S Q+ Q+ PV ++++S +T+ GD PS STSPSTNNCQ+SS
Sbjct: 798 SCTNNGLSTLQPPQMLVSRPQEKQNPPVGGGVKAYSGITDGGDAPSSSTSPSTNNCQISS 857
Query: 612 SNLLNRNQQGTAMLIGDPVAEPSSNLVHDFQSKSDIRIKHELPISKGLDQIKYKGTITD- 436
S LNR+Q G A+LI D + S NLV D SKSD+R+K EL + Q K K ++TD
Sbjct: 858 SGFLNRSQSGPAILIPDAAIDMSGNLVQDLYSKSDMRLKQEL-----VGQQKSKASLTDH 912
Query: 435 QLEASSSGTSYCLDA--STIQQNYALPSFCLDGDVQSHPRNNLPFSANVD-GLAPDTLMS 265
QLEAS+SGTSY LD + QQN+ P+F LDGD RN+L ANVD G PDTL+S
Sbjct: 913 QLEASASGTSYGLDGGENNRQQNFLAPTFGLDGD----SRNSLLGGANVDNGFVPDTLLS 968
Query: 264 RGYDSQKDL*NLLSNYGGTPRDIETELSTAAISSQSFGAPNMPFKPGCSSDVALNDAGVL 85
RGYDSQKDL N+LSNYGG DI TE+ST+A+ +QSFG PN+ P S+D+A+NDAGVL
Sbjct: 969 RGYDSQKDLQNMLSNYGGVTNDIGTEMSTSAVRTQSFGVPNV---PAISNDLAVNDAGVL 1025
Query: 84 NNGLWGSQAQRLRTYTKVQKRGSVGRCI 1
GLW +Q QR+RTYTKVQKRGSVGR I
Sbjct: 1026 GGGLWPAQTQRMRTYTKVQKRGSVGRSI 1053
>TAIR9_protein||AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/
transcription factor/ transcription regulator | chr5:7016704-7021504
REVERSE
Length = 1165
Score = 257 bits (654), Expect = 2e-068
Identities = 149/268 (55%), Positives = 185/268 (69%), Gaps = 18/268 (6%)
Frame = -2
Query: 786 SSNNFSASPMMQAQHVSSIQQQNQHKPV-TAIRSHSNLTE-GDGPSCSTSPSTNNCQVSS 613
S N S + Q + S Q+ Q+ PV ++++S +T+ GD PS STSPSTNNCQ+SS
Sbjct: 797 SCTNNGLSTLQPPQMLVSRPQEKQNPPVGGGVKAYSGITDGGDAPSSSTSPSTNNCQISS 856
Query: 612 SNLLNRNQQGTAMLIGDPVAEPSSNLVHDFQSKSDIRIKHELPISKGLDQIKYKGTITD- 436
S LNR+Q G A+LI D + S NLV D SKSD+R+K EL + Q K K ++TD
Sbjct: 857 SGFLNRSQSGPAILIPDAAIDMSGNLVQDLYSKSDMRLKQEL-----VGQQKSKASLTDH 911
Query: 435 QLEASSSGTSYCLDA--STIQQNYALPSFCLDGDVQSHPRNNLPFSANVD-GLAPDTLMS 265
QLEAS+SGTSY LD + QQN+ P+F LDGD RN+L ANVD G PDTL+S
Sbjct: 912 QLEASASGTSYGLDGGENNRQQNFLAPTFGLDGD----SRNSLLGGANVDNGFVPDTLLS 967
Query: 264 RGYDSQKDL*NLLSNYGGTPRDIETELSTAAISSQSFGAPNMPFKPGCSSDVALNDAGVL 85
RGYDSQKDL N+LSNYGG DI TE+ST+A+ +QSFG PN+ P S+D+A+NDAGVL
Sbjct: 968 RGYDSQKDLQNMLSNYGGVTNDIGTEMSTSAVRTQSFGVPNV---PAISNDLAVNDAGVL 1024
Query: 84 NNGLWGSQAQRLRTYTKVQKRGSVGRCI 1
GLW +Q QR+RTYTKVQKRGSVGR I
Sbjct: 1025 GGGLWPAQTQRMRTYTKVQKRGSVGRSI 1052
>TAIR9_protein||AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP,
IAA23, IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/ transcription regulator
| chr5:7016704-7021504 REVERSE
Length = 1151
Score = 257 bits (654), Expect = 2e-068
Identities = 149/268 (55%), Positives = 185/268 (69%), Gaps = 18/268 (6%)
Frame = -2
Query: 786 SSNNFSASPMMQAQHVSSIQQQNQHKPV-TAIRSHSNLTE-GDGPSCSTSPSTNNCQVSS 613
S N S + Q + S Q+ Q+ PV ++++S +T+ GD PS STSPSTNNCQ+SS
Sbjct: 798 SCTNNGLSTLQPPQMLVSRPQEKQNPPVGGGVKAYSGITDGGDAPSSSTSPSTNNCQISS 857
Query: 612 SNLLNRNQQGTAMLIGDPVAEPSSNLVHDFQSKSDIRIKHELPISKGLDQIKYKGTITD- 436
S LNR+Q G A+LI D + S NLV D SKSD+R+K EL + Q K K ++TD
Sbjct: 858 SGFLNRSQSGPAILIPDAAIDMSGNLVQDLYSKSDMRLKQEL-----VGQQKSKASLTDH 912
Query: 435 QLEASSSGTSYCLDA--STIQQNYALPSFCLDGDVQSHPRNNLPFSANVD-GLAPDTLMS 265
QLEAS+SGTSY LD + QQN+ P+F LDGD RN+L ANVD G PDTL+S
Sbjct: 913 QLEASASGTSYGLDGGENNRQQNFLAPTFGLDGD----SRNSLLGGANVDNGFVPDTLLS 968
Query: 264 RGYDSQKDL*NLLSNYGGTPRDIETELSTAAISSQSFGAPNMPFKPGCSSDVALNDAGVL 85
RGYDSQKDL N+LSNYGG DI TE+ST+A+ +QSFG PN+ P S+D+A+NDAGVL
Sbjct: 969 RGYDSQKDLQNMLSNYGGVTNDIGTEMSTSAVRTQSFGVPNV---PAISNDLAVNDAGVL 1025
Query: 84 NNGLWGSQAQRLRTYTKVQKRGSVGRCI 1
GLW +Q QR+RTYTKVQKRGSVGR I
Sbjct: 1026 GGGLWPAQTQRMRTYTKVQKRGSVGRSI 1053
>TAIR9_protein||AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN
RESPONSE FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1087
Score = 236 bits (602), Expect = 2e-062
Identities = 140/278 (50%), Positives = 180/278 (64%), Gaps = 22/278 (7%)
Frame = -2
Query: 783 SNNFSASPMMQAQHVS-SIQQQNQ---HKPVTAIRSHSNLTEGDGPSCSTSPSTNNC--- 625
+N+F AS MQ + S QQQ Q V A RSHS T+G+ PSCSTSPS NN
Sbjct: 701 NNSFPASTFMQPPQIQVSPQQQGQMSNKNLVAAGRSHSGHTDGEAPSCSTSPSANNTGHD 760
Query: 624 QVSSSNLLNRNQ---QGTAMLIGDPVAEPSSNLVHDFQSKSDIRIKHELPISKGL-DQIK 457
VS +N L+RNQ Q ++ D V E +SN V + +K++ RI + K + +
Sbjct: 761 NVSPTNFLSRNQQQGQAASVSASDSVFERASNPVQELYTKTESRISQGMMNMKSAGEHFR 820
Query: 456 YKGTITDQLEASSSGTSYCLDA---STIQQNYALPSFCLDGDVQS-HPRNNLPFSANVDG 289
+K +TDQ++ S++GT+YC D QQ + LPSF DGD QS HPRNNL F N++
Sbjct: 821 FKSAVTDQIDVSTAGTTYCPDVVGPVQQQQTFPLPSFGFDGDCQSHHPRNNLAFPGNLEA 880
Query: 288 LAPDTLMSRGYDSQKDL*NLLSNYGGTPRDIETELSTAAISSQSFGAPNMPFKPGCSSDV 109
+ D L SQKD NL+ NYG TPRDIETELS+AAISSQSFG P++PFKPGCS++V
Sbjct: 881 VTSDPLY-----SQKDFQNLVPNYGNTPRDIETELSSAAISSQSFGIPSIPFKPGCSNEV 935
Query: 108 -ALNDAGVLN-NGLWGSQAQRLRTYTKVQKRGSVGRCI 1
+ND+G++N GLW +Q QR+RTYTKVQKRGSVGR I
Sbjct: 936 GGINDSGIMNGGGLWPNQTQRMRTYTKVQKRGSVGRSI 973
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,211,404,566
Number of Sequences: 33410
Number of Extensions: 1211404566
Number of Successful Extensions: 66311372
Number of sequences better than 0.0: 0
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