BLASTX 7.6.2
Query= RU04801 /QuerySize=579
(578 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G30220.1 | Symbols: RUXF | RUXF (SMALL NUCLEAR... 153 1e-037
TAIR9_protein||AT2G14285.1 | Symbols: | FUNCTIONS IN: molecular... 99 2e-021
TAIR9_protein||AT2G43810.1 | Symbols: | small nuclear ribonucle... 70 8e-013
TAIR9_protein||AT2G43810.2 | Symbols: | small nuclear ribonucle... 70 8e-013
TAIR9_protein||AT3G59810.1 | Symbols: | small nuclear ribonucle... 69 2e-012
>TAIR9_protein||AT4G30220.1 | Symbols: RUXF | RUXF (SMALL NUCLEAR
RIBONUCLEOPROTEIN F) | chr4:14803100-14804259 REVERSE
Length = 89
Score = 153 bits (384), Expect = 1e-037
Identities = 72/77 (93%), Positives = 73/77 (94%)
Frame = +1
Query: 91 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 270
MATIPVNPKPFLNNLTGKTV VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60
Query: 271 GEILIRCNNVLYLRGVP 321
GEILIRCNNVLY+RGVP
Sbjct: 61 GEILIRCNNVLYVRGVP 77
>TAIR9_protein||AT2G14285.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear
ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein,
core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and
archaea-type, core (InterPro:IPR006649), Like-Sm
ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis
thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
(TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species:
Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63;
Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). |
chr2:6052612-6053500 REVERSE
Length = 62
Score = 99 bits (244), Expect = 2e-021
Identities = 46/50 (92%), Positives = 47/50 (94%)
Frame = +1
Query: 172 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVP 321
MEYKGFL SVDSYMNLQL NTEEYIDGQ TGNLGEILIRCNNVLY+RGVP
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 50
>TAIR9_protein||AT2G43810.1 | Symbols: | small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
F, putative | chr2:18149725-18150879 FORWARD
Length = 92
Score = 70 bits (170), Expect = 8e-013
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +1
Query: 112 PKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRC 291
P FL ++ GK V VKL G++Y+G L +D YMN+ + TEEY++GQ G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74
Query: 292 NNVLYL 309
NNVLY+
Sbjct: 75 NNVLYI 80
>TAIR9_protein||AT2G43810.2 | Symbols: | small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
F, putative | chr2:18149725-18150879 FORWARD
Length = 92
Score = 70 bits (170), Expect = 8e-013
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +1
Query: 112 PKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRC 291
P FL ++ GK V VKL G++Y+G L +D YMN+ + TEEY++GQ G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74
Query: 292 NNVLYL 309
NNVLY+
Sbjct: 75 NNVLYI 80
>TAIR9_protein||AT3G59810.1 | Symbols: | small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
F, putative | chr3:22096841-22097666 FORWARD
Length = 92
Score = 69 bits (167), Expect = 2e-012
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +1
Query: 112 PKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRC 291
P FL ++ G+ V VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 292 NNVLYLRGV 318
NNVLY+ V
Sbjct: 75 NNVLYISTV 83
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,211,404,566
Number of Sequences: 33410
Number of Extensions: 1211404566
Number of Successful Extensions: 66311372
Number of sequences better than 0.0: 0
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