BLASTX 7.6.2
Query= RU05156 /QuerySize=1743
(1742 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G47210.1 | Symbols: | nuclear RNA-binding pro... 112 1e-024
TAIR9_protein||AT4G17520.1 | Symbols: | nuclear RNA-binding pro... 111 1e-024
TAIR9_protein||AT5G47210.3 | Symbols: | nuclear RNA-binding pro... 97 4e-020
TAIR9_protein||AT4G16830.1 | Symbols: | nuclear RNA-binding pro... 75 2e-013
TAIR9_protein||AT4G16830.2 | Symbols: | nuclear RNA-binding pro... 75 2e-013
TAIR9_protein||AT4G16830.3 | Symbols: | nuclear RNA-binding pro... 75 2e-013
TAIR9_protein||AT5G47210.2 | Symbols: | nuclear RNA-binding pro... 59 7e-009
>TAIR9_protein||AT5G47210.1 | Symbols: | nuclear RNA-binding protein, putative
| chr5:19169222-19171012 REVERSE
Length = 358
Score = 112 bits (278), Expect = 1e-024
Identities = 78/218 (35%), Positives = 97/218 (44%), Gaps = 9/218 (4%)
Frame = +1
Query: 727 DEERPRRIHERRSGTGRGNELKREGSGRGNWGSQTDEFPEGTEDGVNATEKNLGEEKPVG 906
D ERP R ++R S TG G +KR G GRGNWG+ D+ P +E+ EK+ EK G
Sbjct: 143 DVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGG 202
Query: 907 E---VDAADDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALQALKTEERKVDTKEF 1077
E +A + ALQA K EERKVDTK F
Sbjct: 203 EDETPEAKKELTAEEKAQKEAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVF 262
Query: 1078 ESLQQLSNKKGND-DIFIKLGXXXXXXXXXXXXXXXXXXXVSINEFLKPAEGEXXXXXXX 1254
ES+QQLSNKK D +IFIKLG +SINEFLKPA+G+
Sbjct: 263 ESMQQLSNKKNTDEEIFIKLG---SDKEKRKDATEKAKKSLSINEFLKPADGKRYNGRGG 319
Query: 1255 XXXXXXXXXXXXXXXXXQSSVE--APPIEDPSHFPTLG 1362
+ + E AP I D + FP+LG
Sbjct: 320 GSRGRGGRGGRGEGGNQRYAKEAAAPAIGDTAQFPSLG 357
>TAIR9_protein||AT4G17520.1 | Symbols: | nuclear RNA-binding protein, putative
| chr4:9771496-9773313 FORWARD
Length = 361
Score = 111 bits (277), Expect = 1e-024
Identities = 69/170 (40%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Frame = +1
Query: 727 DEERPRRIHERRSGTGRGNELKREGSGRGNWGSQTDEFPEGTEDGVNATEKNLGEEKPVG 906
D ERPR+ ++R S T GNE KR+G+GR NWG+ D+ TE+ +KNL EK G
Sbjct: 132 DSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQDDITPVTEESTAVVDKNLTVEKQDG 191
Query: 907 EVDAADDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALQALKTEERKVDTKEFESL 1086
E +A D ALQA K EERKVDTK FE++
Sbjct: 192 EGEATDAK-NETPAEKAEEKPEDKEMTLEEYEKVLEEKKKALQATKVEERKVDTKAFEAM 250
Query: 1087 QQLSNKK-GNDDIFIKLGXXXXXXXXXXXXXXXXXXXVSINEFLKPAEGE 1233
QQLS+KK ND++FIKLG +SINEFLKPA+G+
Sbjct: 251 QQLSSKKSNNDEVFIKLG--TEKDKRITEREEKTRKSLSINEFLKPADGK 298
>TAIR9_protein||AT5G47210.3 | Symbols: | nuclear RNA-binding protein, putative
| chr5:19169388-19171012 REVERSE
Length = 302
Score = 97 bits (239), Expect = 4e-020
Identities = 59/141 (41%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Frame = +1
Query: 727 DEERPRRIHERRSGTGRGNELKREGSGRGNWGSQTDEFPEGTEDGVNATEKNLGEEKPVG 906
D ERP R ++R S TG G +KR G GRGNWG+ D+ P +E+ EK+ EK G
Sbjct: 143 DVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGG 202
Query: 907 E---VDAADDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALQALKTEERKVDTKEF 1077
E +A + ALQA K EERKVDTK F
Sbjct: 203 EDETPEAKKELTAEEKAQKEAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVF 262
Query: 1078 ESLQQLSNKKGND-DIFIKLG 1137
ES+QQLSNKK D +IFIKLG
Sbjct: 263 ESMQQLSNKKNTDEEIFIKLG 283
>TAIR9_protein||AT4G16830.1 | Symbols: | nuclear RNA-binding protein (RGGA) |
chr4:9470621-9472308 FORWARD
Length = 356
Score = 75 bits (182), Expect = 2e-013
Identities = 42/68 (61%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Frame = +1
Query: 1027 ALQALKTEERKVDTKEFESLQQLSNKKGNDDIFIKLGXXXXXXXXXXXXXXXXXXXVSIN 1206
ALQ+L T ERKVDTK FES+QQLSNKK ND+IFIKLG VSIN
Sbjct: 241 ALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLG--SDKDKRKDDKEEKAKKAVSIN 298
Query: 1207 EFLKPAEG 1230
EFLKPAEG
Sbjct: 299 EFLKPAEG 306
Score = 73 bits (177), Expect = 6e-013
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Frame = +1
Query: 727 DEERPRRIHERRSGTGRGNELKREGSGRGNWGSQTDEFPEGTE--DGVNATEKNLGEEKP 900
D ERPRR ERRSGTGRG++ KR+GSGRGNWG+ +E TE GV TEK++GE+
Sbjct: 143 DGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVE-TEKDVGEKPA 201
Query: 901 VGEVDAADDN 930
V +V AAD N
Sbjct: 202 VDDV-AADAN 210
>TAIR9_protein||AT4G16830.2 | Symbols: | nuclear RNA-binding protein (RGGA) |
chr4:9470979-9472308 FORWARD
Length = 266
Score = 75 bits (182), Expect = 2e-013
Identities = 42/68 (61%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Frame = +1
Query: 1027 ALQALKTEERKVDTKEFESLQQLSNKKGNDDIFIKLGXXXXXXXXXXXXXXXXXXXVSIN 1206
ALQ+L T ERKVDTK FES+QQLSNKK ND+IFIKLG VSIN
Sbjct: 151 ALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLG--SDKDKRKDDKEEKAKKAVSIN 208
Query: 1207 EFLKPAEG 1230
EFLKPAEG
Sbjct: 209 EFLKPAEG 216
Score = 73 bits (177), Expect = 6e-013
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Frame = +1
Query: 727 DEERPRRIHERRSGTGRGNELKREGSGRGNWGSQTDEFPEGTE--DGVNATEKNLGEEKP 900
D ERPRR ERRSGTGRG++ KR+GSGRGNWG+ +E TE GV TEK++GE+
Sbjct: 53 DGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVE-TEKDVGEKPA 111
Query: 901 VGEVDAADDN 930
V +V AAD N
Sbjct: 112 VDDV-AADAN 120
>TAIR9_protein||AT4G16830.3 | Symbols: | nuclear RNA-binding protein (RGGA) |
chr4:9470652-9472308 FORWARD
Length = 346
Score = 75 bits (182), Expect = 2e-013
Identities = 42/68 (61%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Frame = +1
Query: 1027 ALQALKTEERKVDTKEFESLQQLSNKKGNDDIFIKLGXXXXXXXXXXXXXXXXXXXVSIN 1206
ALQ+L T ERKVDTK FES+QQLSNKK ND+IFIKLG VSIN
Sbjct: 231 ALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLG--SDKDKRKDDKEEKAKKAVSIN 288
Query: 1207 EFLKPAEG 1230
EFLKPAEG
Sbjct: 289 EFLKPAEG 296
Score = 73 bits (177), Expect = 6e-013
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Frame = +1
Query: 727 DEERPRRIHERRSGTGRGNELKREGSGRGNWGSQTDEFPEGTE--DGVNATEKNLGEEKP 900
D ERPRR ERRSGTGRG++ KR+GSGRGNWG+ +E TE GV TEK++GE+
Sbjct: 133 DGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVE-TEKDVGEKPA 191
Query: 901 VGEVDAADDN 930
V +V AAD N
Sbjct: 192 VDDV-AADAN 200
>TAIR9_protein||AT5G47210.2 | Symbols: | nuclear RNA-binding protein, putative
| chr5:19169155-19171012 REVERSE
Length = 306
Score = 59 bits (142), Expect = 7e-009
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +1
Query: 727 DEERPRRIHERRSGTGRGNELKREGSGRGNWGSQTDEFPEGTEDGVNATEKNLGEEKPVG 906
D ERP R ++R S TG G +KR G GRGNWG+ D+ P +E+ EK+ EK G
Sbjct: 143 DVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGG 202
Query: 907 E 909
E
Sbjct: 203 E 203
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,327,064,416
Number of Sequences: 33410
Number of Extensions: 1327064416
Number of Successful Extensions: 76223347
Number of sequences better than 0.0: 0
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