BLASTX 7.6.2
Query= RU05324 /QuerySize=850
(849 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G48020.1 | Symbols: | FUNCTIONS IN: molecular... 92 5e-019
TAIR9_protein||AT5G62860.1 | Symbols: | F-box family protein-re... 89 2e-018
TAIR9_protein||AT5G14890.1 | Symbols: | NHL repeat-containing p... 77 2e-014
TAIR9_protein||AT3G01430.1 | Symbols: | FUNCTIONS IN: molecular... 59 4e-009
>TAIR9_protein||AT3G48020.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4
anthesis, LP.04 four leaves visible; BEST Arabidopsis thaliana protein
match is: F-box family protein-related (TAIR:AT5G62860.1); Has 38 Blast
hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr3:17724593-17725000 FORWARD
Length = 136
Score = 92 bits (226), Expect = 5e-019
Identities = 57/125 (45%), Positives = 68/125 (54%), Gaps = 14/125 (11%)
Frame = +2
Query: 137 SRCCFCIPSSSRWWDRVRNDD----GWWSRGKRAIYKVREWSEIVAGPKWKTFIRRFNXX 304
S CC SS WW R+ ++ WW RA K+REWSEIVAGP+WKTFIRRFN
Sbjct: 13 SSCCSTTVKSS-WWQRIHRNNHQEPRWW---VRAFLKIREWSEIVAGPRWKTFIRRFN-R 67
Query: 305 XXXXXXXXXXXXXFQYDPLSYALNF-DEGPVAEEEDESGGFRDFSARFAPVKSSDPVQLG 481
F+YDP+SY L+F DE ++E GG R FS R+A V PV G
Sbjct: 68 DPRRGQDWDDSDKFRYDPVSYTLSFEDEDKDDDDEAGVGGVRSFSMRYASV----PVASG 123
Query: 482 KDVAV 496
K AV
Sbjct: 124 KSPAV 128
>TAIR9_protein||AT5G62860.1 | Symbols: | F-box family protein-related |
chr5:25232632-25234567 FORWARD
Length = 378
Score = 89 bits (220), Expect = 2e-018
Identities = 51/98 (52%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Frame = +2
Query: 203 WWSRGKRAIYKVREWSEIVAGPKWKTFIRRFNXXXXXXXXXXXXXXXFQYDPLSYALNFD 382
WW RA K+REWSEIVAGP+WKTFIRRFN FQYDPLSY+LNFD
Sbjct: 271 WWI---RASLKIREWSEIVAGPRWKTFIRRFN-RDPRRGRDWDASEKFQYDPLSYSLNFD 326
Query: 383 EGPVAEEEDESGGFRDFSARFAPVKSSDPVQLGKDVAV 496
+ +E GG R FS RFA V PV GK A+
Sbjct: 327 DDDEEDEYVGLGGLRSFSTRFASV----PVYSGKAPAI 360
>TAIR9_protein||AT5G14890.1 | Symbols: | NHL repeat-containing protein |
chr5:4818056-4821534 FORWARD
Length = 755
Score = 77 bits (187), Expect = 2e-014
Identities = 44/112 (39%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Frame = +2
Query: 179 DRVRNDDGWWSRGKRAIYKVREWSEIVAGPKWKTFIRRFN-----XXXXXXXXXXXXXXX 343
D++ D+ WW G K+REWSEIVAGPKWKTFIRRF
Sbjct: 638 DKLEPDERWWVSG---WMKMREWSEIVAGPKWKTFIRRFGRNHCCNGGIDGGCNRPEHVS 694
Query: 344 FQYDPLSYALNFDEGPVAEEEDESGGFRDFSARFA----PVKSSDPVQLGKD 487
F+YD SY+LNFD+G ++ +RD+S RFA PV + + D
Sbjct: 695 FRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMRFAAPSLPVSTKCSIDFDND 746
Score = 64 bits (153), Expect = 1e-010
Identities = 30/52 (57%), Positives = 34/52 (65%), Gaps = 9/52 (17%)
Frame = +2
Query: 158 PSSSRWWDRVRN------DDGWWSRGKRAIYKVREWSEIVAGPKWKTFIRRF 295
P+ S WW R+R D+ WW G K+REWSEIVAGPKWKTFIRRF
Sbjct: 625 PNGSVWWQRIRTVDKLEPDERWWVSG---WMKMREWSEIVAGPKWKTFIRRF 673
>TAIR9_protein||AT3G01430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED
DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten
leaves visible, petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: NHL repeat-containing protein
(TAIR:AT5G14890.1); Has 48 Blast hits to 48 proteins in 8 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:165595-166137
REVERSE
Length = 181
Score = 59 bits (140), Expect = 4e-009
Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 9/49 (18%)
Frame = +2
Query: 167 SRWW------DRVRNDDGWWSRGKRAIYKVREWSEIVAGPKWKTFIRRF 295
S WW D++ D+ WW RG R ++REWSE+VAGP+WKT+IRRF
Sbjct: 45 SVWWQRITTVDKLEPDERWWIRGWR---RMREWSELVAGPRWKTYIRRF 90
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,327,064,416
Number of Sequences: 33410
Number of Extensions: 1327064416
Number of Successful Extensions: 76223347
Number of sequences better than 0.0: 0
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