BLASTX 7.6.2
Query= RU05863 /QuerySize=952
(951 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 79 3e-015
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 79 3e-015
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 76 2e-014
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 75 4e-014
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 75 4e-014
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 75 4e-014
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 72 5e-013
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 72 5e-013
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 72 5e-013
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 62 4e-010
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 62 4e-010
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 62 4e-010
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 49 3e-006
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 79 bits (194), Expect = 3e-015
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 575
VGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM YNKK EG
Sbjct: 66 VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG 110
Score = 68 bits (165), Expect = 7e-012
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPNKPKRP+SAFFVFME+FR YK+EHP NKSVAAV ++
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKA 69
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 79 bits (194), Expect = 3e-015
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 575
VGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM YNKK EG
Sbjct: 66 VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG 110
Score = 68 bits (165), Expect = 7e-012
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPNKPKRP+SAFFVFME+FR YK+EHP NKSVAAV ++
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKA 69
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 76 bits (186), Expect = 2e-014
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKK 563
VGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM YNKK
Sbjct: 66 VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106
Score = 68 bits (165), Expect = 7e-012
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPNKPKRP+SAFFVFME+FR YK+EHP NKSVAAV ++
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKA 69
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 75 bits (184), Expect = 4e-014
Identities = 35/45 (77%), Positives = 38/45 (84%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 575
VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ YNKK EG
Sbjct: 69 VGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
Score = 69 bits (166), Expect = 5e-012
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 134 KGGKSRAAAPKRSDTKLXXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREKYKKEH 313
KG KS+ + S + DPNKPKRPASAFFVFME+FRE +KKE+
Sbjct: 2 KGAKSKTET-RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 314 PNNKSVAAVSES 349
P NKSVA V ++
Sbjct: 61 PKNKSVATVGKA 72
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 75 bits (184), Expect = 4e-014
Identities = 35/45 (77%), Positives = 38/45 (84%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 575
VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ YNKK EG
Sbjct: 69 VGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
Score = 69 bits (166), Expect = 5e-012
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 134 KGGKSRAAAPKRSDTKLXXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREKYKKEH 313
KG KS+ + S + DPNKPKRPASAFFVFME+FRE +KKE+
Sbjct: 2 KGAKSKTET-RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 314 PNNKSVAAVSES 349
P NKSVA V ++
Sbjct: 61 PKNKSVATVGKA 72
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 75 bits (184), Expect = 4e-014
Identities = 35/45 (77%), Positives = 38/45 (84%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 575
VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ YNKK EG
Sbjct: 69 VGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
Score = 69 bits (166), Expect = 5e-012
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 134 KGGKSRAAAPKRSDTKLXXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREKYKKEH 313
KG KS+ + S + DPNKPKRPASAFFVFME+FRE +KKE+
Sbjct: 2 KGAKSKTET-RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 314 PNNKSVAAVSES 349
P NKSVA V ++
Sbjct: 61 PKNKSVATVGKA 72
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 72 bits (175), Expect = 5e-013
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 581
VGKAGG+KWKS+S AEKAPY+ KA KRK EY K MD YNK EG +
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD 130
Score = 57 bits (136), Expect = 2e-008
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPNKPKR SAFFVF+E+FR +KKE+PN K+V+AV ++
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKA 87
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 72 bits (175), Expect = 5e-013
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 581
VGKAGG+KWKS+S AEKAPY+ KA KRK EY K MD YNK EG +
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD 130
Score = 57 bits (136), Expect = 2e-008
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPNKPKR SAFFVF+E+FR +KKE+PN K+V+AV ++
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKA 87
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 72 bits (175), Expect = 5e-013
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 581
VGKAGG+KWKS+S AEKAPY+ KA KRK EY K MD YNK EG +
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD 130
Score = 57 bits (136), Expect = 2e-008
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPNKPKR SAFFVF+E+FR +KKE+PN K+V+AV ++
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKA 87
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 62 bits (150), Expect = 4e-010
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 581
VGKA G +WK+++D +KAPY AKAE RK EY KN+ YN K A G N
Sbjct: 66 VGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN 112
Score = 58 bits (138), Expect = 9e-009
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPN+PKRP SAFFVF+E+FR+++ +PNNKSVA V ++
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKA 69
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 62 bits (150), Expect = 4e-010
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 581
VGKA G +WK+++D +KAPY AKAE RK EY KN+ YN K A G N
Sbjct: 66 VGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN 112
Score = 58 bits (138), Expect = 9e-009
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPN+PKRP SAFFVF+E+FR+++ +PNNKSVA V ++
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKA 69
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 62 bits (150), Expect = 4e-010
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +3
Query: 441 VGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 581
VGKA G +WK+++D +KAPY AKAE RK EY KN+ YN K A G N
Sbjct: 66 VGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN 112
Score = 58 bits (138), Expect = 9e-009
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPN+PKRP SAFFVF+E+FR+++ +PNNKSVA V ++
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKA 69
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 49 bits (116), Expect = 3e-006
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = +2
Query: 233 DPNKPKRPASAFFVFMEEFREKYKKEHPNNKSVAAVSES 349
DPN+PK+P S FFVF+++FR+++ +P+NKSV V +
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRA 68
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,509,392,761
Number of Sequences: 33410
Number of Extensions: 1509392761
Number of Successful Extensions: 86928218
Number of sequences better than 0.0: 0
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