BLASTX 7.6.2
Query= RU05878 /QuerySize=1821
(1820 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G13930.1 | Symbols: SHM4 | SHM4 (serine hydrox... 845 3e-245
TAIR9_protein||AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | EDA36... 758 2e-219
TAIR9_protein||AT1G36370.1 | Symbols: SHM7 | SHM7 (serine hydrox... 613 2e-175
TAIR9_protein||AT1G22020.1 | Symbols: SHM6 | SHM6 (serine hydrox... 604 8e-173
TAIR9_protein||AT4G32520.1 | Symbols: SHM3 | SHM3 (SERINE HYDROX... 541 6e-154
TAIR9_protein||AT4G32520.2 | Symbols: SHM3 | SHM3 (SERINE HYDROX... 541 6e-154
TAIR9_protein||AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | SHM1 (S... 537 1e-152
TAIR9_protein||AT5G26780.1 | Symbols: SHM2 | SHM2 (SERINE HYDROX... 525 4e-149
TAIR9_protein||AT5G26780.3 | Symbols: SHM2 | SHM2 (SERINE HYDROX... 399 3e-111
TAIR9_protein||AT5G26780.2 | Symbols: SHM2 | SHM2 (SERINE HYDROX... 399 3e-111
>TAIR9_protein||AT4G13930.1 | Symbols: SHM4 | SHM4 (serine
hydroxymethyltransferase 4); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr4:8048013-8050021 REVERSE
Length = 472
Score = 845 bits (2181), Expect = 3e-245
Identities = 410/472 (86%), Positives = 441/472 (93%)
Frame = +1
Query: 58 MEAVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 237
ME V++WGNT+L +VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
Sbjct: 1 MEPVSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
Query: 238 EGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQP 417
EG+PGNRYYGGNE+ID+IENLCRSRAL+AFH D + WGVNVQPYSGSPANFAAYTA+LQP
Sbjct: 61 EGIPGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQP 120
Query: 418 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 597
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN +TGYIDYDKLEEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDF 180
Query: 598 RPRLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTT 777
RP+L+ICGGSAYPRDWDYARFRA+ADK GALLLCDMAHISGLV AQEAANPFE+CD+VTT
Sbjct: 181 RPKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTT 240
Query: 778 TTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALA 957
TTHKSLRGPRAGMIFYR EGA YDFEDKINFAVFP+LQGGPHNHQIGALA
Sbjct: 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALA 300
Query: 958 VALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKV 1137
VALKQA TPGFK YA+QVKANAVALG YLMSK Y++VT GTENHLVLWDLRPLGLTGNKV
Sbjct: 301 VALKQANTPGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTGNKV 360
Query: 1138 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTL 1317
EKLCDL +IT+NKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFE+IGEFL RAVTLTL
Sbjct: 361 EKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVTLTL 420
Query: 1318 KIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQMSQMKYKD* 1473
IQK +GKLLKDFNKGLVNNK++++LKADVEKFSAS++MPGF MS+MKYKD*
Sbjct: 421 DIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFLMSEMKYKD* 472
>TAIR9_protein||AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | EDA36 (EMBRYO SAC
DEVELOPMENT ARREST 37); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr4:8032146-8033718 REVERSE
Length = 471
Score = 758 bits (1957), Expect = 2e-219
Identities = 361/468 (77%), Positives = 415/468 (88%)
Frame = +1
Query: 58 MEAVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 237
ME V +WGNT+L+ VDPEI+DLIEKEK RQCRGIELIA+ENFTS AV+EALGS LTNKYS
Sbjct: 1 MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYS 60
Query: 238 EGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQP 417
EGMPGNRYYGG E+ID+IE+LCRSR+L+AFH + +WGVNVQPYSGSPANFAAYTA+LQP
Sbjct: 61 EGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQP 120
Query: 418 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 597
HDRIMGLDLPSGGH+THGYY+SGGK ISATSIYFE+LPYKV+S TGYIDYDKLEEKA+DF
Sbjct: 121 HDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDF 180
Query: 598 RPRLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTT 777
RP+LIICGG++YPR+WDYARFRAVADK GA LLCDMAH S LV AQEAA+PFE+CD+VTT
Sbjct: 181 RPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTT 240
Query: 778 TTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALA 957
+THKSLRGPRAGMIFYR EG YDF+ KIN AVFP+LQ GPHN++IGALA
Sbjct: 241 STHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALA 300
Query: 958 VALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKV 1137
VALKQ M P FK YA+QVKANA L YL++K Y LVT GT+NHL+LWDLRPLGLTGNKV
Sbjct: 301 VALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKV 360
Query: 1138 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTL 1317
EK+C+L IT+N+NAVFGD+S LAPGGVRIG PAMTSRGLVEKDFEKIGEFLHRAVT+TL
Sbjct: 361 EKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITL 420
Query: 1318 KIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQMSQMK 1461
IQ+++GK++KDFNKGLVNNKEI+E+KADVE+F+ FDMPGF +S+ +
Sbjct: 421 DIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESR 468
>TAIR9_protein||AT1G36370.1 | Symbols: SHM7 | SHM7 (serine
hydroxymethyltransferase 7); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr1:13696240-13698576 REVERSE
Length = 599
Score = 613 bits (1579), Expect = 2e-175
Identities = 292/463 (63%), Positives = 358/463 (77%), Gaps = 5/463 (1%)
Frame = +1
Query: 64 AVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEG 243
AV AWG+ + DP+IH+L+EKEK+RQ RGIELIASENF AV+EALGS LTNKYSEG
Sbjct: 129 AVRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLTNKYSEG 188
Query: 244 MPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHD 423
MPG RYY GN+YIDQIENLC RAL AF L++ +WGVNVQPYS + ANFA YT +L P +
Sbjct: 189 MPGARYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTGLLLPGE 248
Query: 424 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRP 603
RIMGLD PSGGH++HGY T GGKKISA SI+FES PYKVN TGYIDYDKLE+KALD+RP
Sbjct: 249 RIMGLDSPSGGHMSHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDKALDYRP 308
Query: 604 RLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTT 783
+++ICGGS+YPRDWD+AR R +ADKCGA+L+CDMAHISGLV +E +NPF+ CDIVT+TT
Sbjct: 309 KILICGGSSYPRDWDFARVRQIADKCGAVLMCDMAHISGLVATKECSNPFDHCDIVTSTT 368
Query: 784 HKSLRGPRAGMIFYR-----XXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIG 948
HK LRGPR G+IFYR YD E+KINFAVFPSLQGGPHN+ I
Sbjct: 369 HKGLRGPRGGIIFYRRGPKIRKQGHHSSHCDTSTHYDLEEKINFAVFPSLQGGPHNNHIA 428
Query: 949 ALAVALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTG 1128
ALA+ALKQ TP +KAY QQ+K NA AL L+ + +LVTGGT+NHL+LWDL P+GLTG
Sbjct: 429 ALAIALKQVATPEYKAYIQQMKKNAQALAAALLRRKCRLVTGGTDNHLLLWDLTPMGLTG 488
Query: 1129 NKVEKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVT 1308
EK+C++ +IT+NK A+FGD+ ++PGGVRIG PAMT+RG +E DFE + +FL +A
Sbjct: 489 KVYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQ 548
Query: 1309 LTLKIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMP 1437
+T +Q+E GK K+F K L NK+I EL+ VE F+ ++MP
Sbjct: 549 ITSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMP 591
>TAIR9_protein||AT1G22020.1 | Symbols: SHM6 | SHM6 (serine
hydroxymethyltransferase 6); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr1:7754599-7757087 FORWARD
Length = 600
Score = 604 bits (1556), Expect = 8e-173
Identities = 289/466 (62%), Positives = 361/466 (77%), Gaps = 5/466 (1%)
Frame = +1
Query: 67 VNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGM 246
V AWGN ++E DPEIH+ +EKEK+RQ RGIELIASENF AV+EALGS LTNKYSEGM
Sbjct: 134 VRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGM 193
Query: 247 PGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHDR 426
PG RYY GN+YIDQIE LC+ RAL AF L+ +WGVNVQPYS + ANFA +T +L P +R
Sbjct: 194 PGARYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTGLLMPGER 253
Query: 427 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPR 606
IMGLD PSGGH++HGYYT GGKK+S SI+FES PYKV+ TGYIDYDKLEEKALD+RP+
Sbjct: 254 IMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEKALDYRPK 313
Query: 607 LIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTTH 786
++ICGGS+YPRDW++ RFR +ADKCGA+L+ DMA ISGLV A+E+ NPF++CDIVT+TTH
Sbjct: 314 ILICGGSSYPRDWEFPRFRHIADKCGAVLMFDMAQISGLVAAKESPNPFDYCDIVTSTTH 373
Query: 787 KSLRGPRAGMIFYR-----XXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGA 951
KSLRGPR G+IFY+ +YDFE+KINF+VFPSLQGGPHN+ I A
Sbjct: 374 KSLRGPRGGIIFYKRGLKPKKQSINLNHCESNIQYDFEEKINFSVFPSLQGGPHNNHIAA 433
Query: 952 LAVALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGN 1131
LA+ALKQA +P +K Y +QVK NA AL L+S+ KL+TGGT+NHL+LWDL PLGLTG
Sbjct: 434 LAIALKQAASPEYKLYMRQVKKNAKALASALISRKCKLITGGTDNHLLLWDLTPLGLTGK 493
Query: 1132 KVEKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTL 1311
EK+C++ +ITVNK A+F ++ ++PGGVRIG+PAMTSRG +E +FE + +FL+RA +
Sbjct: 494 VYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFLYRAAQI 553
Query: 1312 TLKIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQM 1449
Q+E GKL K+ K + + KEI +L+ VE F+ F MP F M
Sbjct: 554 ASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFDM 599
>TAIR9_protein||AT4G32520.1 | Symbols: SHM3 | SHM3 (SERINE
HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr4:15689642-15692334 REVERSE
Length = 530
Score = 541 bits (1393), Expect = 6e-154
Identities = 271/456 (59%), Positives = 340/456 (74%), Gaps = 16/456 (3%)
Frame = +1
Query: 91 LEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 270
L VDPE+ +I KEK RQ R +ELIASENFTS AV+EA+GS LTNKYSEG+PG RYYGG
Sbjct: 83 LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
Query: 271 NEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPS 450
NEYIDQ+E LC++RAL AF LD+++WGVNVQP SGSPANFA YTA+L PHDRIMGLDLP
Sbjct: 143 NEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPH 202
Query: 451 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPRLIICGGSA 630
GGHL+HG+ T+ +++S TSIYFES+PY+++ STG +DYD LE+ A FRP+LII G SA
Sbjct: 203 GGHLSHGFMTA-KRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASA 261
Query: 631 YPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTTHKSLRGPRA 810
Y RD+DY R R +AD GA L+ DMAHISGLV A A+PFE+CDIVTTTTHKSLRGPR
Sbjct: 262 YSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRG 321
Query: 811 GMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMTPGF 990
GMIF+R D E +N AVFP LQGGPHNH IG LAV LK A +P F
Sbjct: 322 GMIFFRKDPING---------VDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372
Query: 991 KAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLANITV 1170
KAY ++V +N AL L+ +KLV+GG++NHLVL DLRP+G+ G +VEK+ D+A+IT+
Sbjct: 373 KAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITL 432
Query: 1171 NKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLKIQKEF-GKLL 1347
NKN+V GD SAL PGG+RIG+PAMT+RGL EKDF + +F+ V +T++ +K G L
Sbjct: 433 NKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKL 492
Query: 1348 KDFNKGLVN-----NKEIEELKADVEKFSASFDMPG 1440
+DFNK + + + ++ LK VE F++ F +PG
Sbjct: 493 QDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPG 528
>TAIR9_protein||AT4G32520.2 | Symbols: SHM3 | SHM3 (SERINE
HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr4:15689642-15692334 REVERSE
Length = 530
Score = 541 bits (1393), Expect = 6e-154
Identities = 271/456 (59%), Positives = 340/456 (74%), Gaps = 16/456 (3%)
Frame = +1
Query: 91 LEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 270
L VDPE+ +I KEK RQ R +ELIASENFTS AV+EA+GS LTNKYSEG+PG RYYGG
Sbjct: 83 LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
Query: 271 NEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPS 450
NEYIDQ+E LC++RAL AF LD+++WGVNVQP SGSPANFA YTA+L PHDRIMGLDLP
Sbjct: 143 NEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPH 202
Query: 451 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPRLIICGGSA 630
GGHL+HG+ T+ +++S TSIYFES+PY+++ STG +DYD LE+ A FRP+LII G SA
Sbjct: 203 GGHLSHGFMTA-KRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASA 261
Query: 631 YPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTTHKSLRGPRA 810
Y RD+DY R R +AD GA L+ DMAHISGLV A A+PFE+CDIVTTTTHKSLRGPR
Sbjct: 262 YSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRG 321
Query: 811 GMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMTPGF 990
GMIF+R D E +N AVFP LQGGPHNH IG LAV LK A +P F
Sbjct: 322 GMIFFRKDPING---------VDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372
Query: 991 KAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLANITV 1170
KAY ++V +N AL L+ +KLV+GG++NHLVL DLRP+G+ G +VEK+ D+A+IT+
Sbjct: 373 KAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITL 432
Query: 1171 NKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLKIQKEF-GKLL 1347
NKN+V GD SAL PGG+RIG+PAMT+RGL EKDF + +F+ V +T++ +K G L
Sbjct: 433 NKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKL 492
Query: 1348 KDFNKGLVN-----NKEIEELKADVEKFSASFDMPG 1440
+DFNK + + + ++ LK VE F++ F +PG
Sbjct: 493 QDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPG 528
>TAIR9_protein||AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | SHM1 (SERINE
TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/
poly(U) binding | chr4:17831891-17834742 REVERSE
Length = 518
Score = 537 bits (1382), Expect = 1e-152
Identities = 270/469 (57%), Positives = 343/469 (73%), Gaps = 7/469 (1%)
Frame = +1
Query: 82 NTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 261
N LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RY
Sbjct: 52 NAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 111
Query: 262 YGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 441
YGGNEYID E LC+ RAL+AF LD +WGVNVQP SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALD 171
Query: 442 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPRLIICG 621
LP GGHL+HGY T KKISA SI+FE++PY+++ STGYIDYD++E+ A FRP+LI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAG 230
Query: 622 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTTHKSLRG 801
SAY R +DYAR R V +K A++L DMAHISGLV A +PF++ D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRG 290
Query: 802 PRAGMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 981
PR MIF+R E YDFEDKIN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGVKEINKQGKE-VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 349
Query: 982 PGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLAN 1161
+KAY +QV +N+ + LM + Y+LV+GGT+NHLVL +L+P G+ G++VEK+ + +
Sbjct: 350 SEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVH 409
Query: 1162 ITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLKIQKEF-G 1338
I NKN V GD SA+ PGG+R+G PA+TSRG VE+DF K+ E+ +AVT+ LK++ E G
Sbjct: 410 IASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQG 469
Query: 1339 KLLKDFNKGLVNN----KEIEELKADVEKFSASFDMPGFQMSQMKYKD* 1473
LKDF + ++ EI +L+ +VE+F+ F GF+ MKYK+*
Sbjct: 470 TKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN* 518
>TAIR9_protein||AT5G26780.1 | Symbols: SHM2 | SHM2 (SERINE
HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr5:9418299-9421725 FORWARD
Length = 518
Score = 525 bits (1351), Expect = 4e-149
Identities = 264/469 (56%), Positives = 340/469 (72%), Gaps = 7/469 (1%)
Frame = +1
Query: 82 NTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 261
N +L+ +DPE+ D+IE EK RQ +G ELI SENFTS +V++A+GS +TNKYSEG PG RY
Sbjct: 52 NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111
Query: 262 YGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 441
YGGNEYID E LC+ RAL+AF LD S+WGVNVQ SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171
Query: 442 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPRLIICG 621
LP GGHL+HGY T KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRP+LI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230
Query: 622 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTTHKSLRG 801
SAY R +DYAR R V +K A++L DMAHISGLV A +PFE+ D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 290
Query: 802 PRAGMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 981
PR MIF+R E YD+ED+IN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQART 349
Query: 982 PGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLAN 1161
P +KAY QV N + L++K Y LV+GGT+NHLVL +L+ G+ G++VEK+ +L +
Sbjct: 350 PEYKAYQDQVLRNCSKFAETLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVH 409
Query: 1162 ITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLKIQKEF-G 1338
I NKN V GD SA+ PGG+R+G PA+TSRG +E+DF K+ E+ AV + LKI+ E G
Sbjct: 410 IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQG 469
Query: 1339 KLLKDFNKGLVNNK----EIEELKADVEKFSASFDMPGFQMSQMKYKD* 1473
LKDF + +N+ E+ +L+ VE+++ F GF+ M+YK+*
Sbjct: 470 TKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFEKETMRYKE* 518
>TAIR9_protein||AT5G26780.3 | Symbols: SHM2 | SHM2 (SERINE
HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr5:9418299-9421725 FORWARD
Length = 534
Score = 399 bits (1025), Expect = 3e-111
Identities = 197/313 (62%), Positives = 238/313 (76%), Gaps = 2/313 (0%)
Frame = +1
Query: 82 NTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 261
N +L+ +DPE+ D+IE EK RQ +G ELI SENFTS +V++A+GS +TNKYSEG PG RY
Sbjct: 52 NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111
Query: 262 YGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 441
YGGNEYID E LC+ RAL+AF LD S+WGVNVQ SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171
Query: 442 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPRLIICG 621
LP GGHL+HGY T KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRP+LI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230
Query: 622 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTTHKSLRG 801
SAY R +DYAR R V +K A++L DMAHISGLV A +PFE+ D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 290
Query: 802 PRAGMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 981
PR MIF+R E YD+ED+IN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQART 349
Query: 982 PGFKAYAQQVKAN 1020
P +KAY QV N
Sbjct: 350 PEYKAYQDQVLRN 362
Score = 132 bits (330), Expect = 1e-030
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Frame = +1
Query: 1042 LMSKDYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLANITVNKNAVFGDSSALAPGGV 1221
L++K Y LV+GGT+NHLVL +L+ G+ G++VEK+ +L +I NKN V GD SA+ PGG+
Sbjct: 386 LLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGI 445
Query: 1222 RIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLKIQKEF-GKLLKDFNKGLVNNK----EI 1386
R+G PA+TSRG +E+DF K+ E+ AV + LKI+ E G LKDF + +N+ E+
Sbjct: 446 RMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEM 505
Query: 1387 EELKADVEKFSASFDMPGFQMSQMKYKD* 1473
+L+ VE+++ F GF+ M+YK+*
Sbjct: 506 SKLREMVEEYAKQFPTIGFEKETMRYKE* 534
>TAIR9_protein||AT5G26780.2 | Symbols: SHM2 | SHM2 (SERINE
HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr5:9418299-9421725 FORWARD
Length = 534
Score = 399 bits (1025), Expect = 3e-111
Identities = 197/313 (62%), Positives = 238/313 (76%), Gaps = 2/313 (0%)
Frame = +1
Query: 82 NTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 261
N +L+ +DPE+ D+IE EK RQ +G ELI SENFTS +V++A+GS +TNKYSEG PG RY
Sbjct: 52 NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111
Query: 262 YGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLD 441
YGGNEYID E LC+ RAL+AF LD S+WGVNVQ SGSPANF YTA+L+PH+RIM LD
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171
Query: 442 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPRLIICG 621
LP GGHL+HGY T KKISA SI+FE++PY+++ +TGYIDYD+LE+ A+ FRP+LI+ G
Sbjct: 172 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAG 230
Query: 622 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTTTTHKSLRG 801
SAY R +DYAR R V +K A++L DMAHISGLV A +PFE+ D+VTTTTHKSLRG
Sbjct: 231 ASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 290
Query: 802 PRAGMIFYRXXXXXXXXXXXEGAEYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMT 981
PR MIF+R E YD+ED+IN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 291 PRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQART 349
Query: 982 PGFKAYAQQVKAN 1020
P +KAY QV N
Sbjct: 350 PEYKAYQDQVLRN 362
Score = 132 bits (330), Expect = 1e-030
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Frame = +1
Query: 1042 LMSKDYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLANITVNKNAVFGDSSALAPGGV 1221
L++K Y LV+GGT+NHLVL +L+ G+ G++VEK+ +L +I NKN V GD SA+ PGG+
Sbjct: 386 LLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGI 445
Query: 1222 RIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLKIQKEF-GKLLKDFNKGLVNNK----EI 1386
R+G PA+TSRG +E+DF K+ E+ AV + LKI+ E G LKDF + +N+ E+
Sbjct: 446 RMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEM 505
Query: 1387 EELKADVEKFSASFDMPGFQMSQMKYKD* 1473
+L+ VE+++ F GF+ M+YK+*
Sbjct: 506 SKLREMVEEYAKQFPTIGFEKETMRYKE* 534
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,509,392,761
Number of Sequences: 33410
Number of Extensions: 1509392761
Number of Successful Extensions: 86928218
Number of sequences better than 0.0: 0
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