BLASTX 7.6.2
Query= RU06042 /QuerySize=994
(993 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G06390.1 | Symbols: | integral membrane famil... 132 5e-031
TAIR9_protein||AT4G15610.1 | Symbols: | integral membrane famil... 117 2e-026
TAIR9_protein||AT4G20390.1 | Symbols: | integral membrane famil... 66 3e-011
TAIR9_protein||AT5G44550.1 | Symbols: | integral membrane famil... 64 1e-010
TAIR9_protein||AT1G14160.1 | Symbols: | integral membrane famil... 55 6e-008
TAIR9_protein||AT5G06200.1 | Symbols: | integral membrane famil... 54 1e-007
>TAIR9_protein||AT3G06390.1 | Symbols: | integral membrane family protein |
chr3:1938913-1939707 REVERSE
Length = 200
Score = 132 bits (330), Expect = 5e-031
Identities = 68/177 (38%), Positives = 108/177 (61%), Gaps = 10/177 (5%)
Frame = -2
Query: 923 MASTDKSANPETGKEVPPPKASYGDTXXXXXXXKAVDLFAVDVALRFLVFAASLTSVLVM 744
MAST+ + +PETGK P P ++ T +D +D+ R L+F+A+LT+++VM
Sbjct: 1 MASTE-NPDPETGKSEPIPASA---TPPPSSAASFLDCRKIDIITRVLLFSATLTALIVM 56
Query: 743 VTSKQTVF------RGPIPLKAKFDHSPALIYFVVALSVAGLYGILTTLASLSVIWKPIF 582
VTS QT P P+ A+F+ SPA IYFVVAL VA Y +++TL S+S++ KP F
Sbjct: 57 VTSDQTEMTQLPGVSSPAPVSAEFNDSPAFIYFVVALVVASFYALISTLVSISLLLKPEF 116
Query: 581 STKFLLHVAFWDVLIXXXXXXXXXXXXXXXYIGYKGNEHLQWNKVCSIFDKYCKHLA 411
+ +F +++A D+++ YI KGNE + WNK+C+++DK+C+++A
Sbjct: 117 TAQFSIYLASLDMVMLGILASATGTAGGVAYIALKGNEEVGWNKICNVYDKFCRYIA 173
>TAIR9_protein||AT4G15610.1 | Symbols: | integral membrane family protein |
chr4:8909162-8910641 FORWARD
Length = 194
Score = 117 bits (291), Expect = 2e-026
Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Frame = -2
Query: 797 VALRFLVFAASLTSVLVMVTSKQT--VFRGPIPLK---AKFDHSPALIYFVVALSVAGLY 633
V LRF++FAA+LTS++VMVTSKQT +F P++ A+F +SPALIYFVVALSVA Y
Sbjct: 31 VVLRFVLFAATLTSIVVMVTSKQTKNIFLPGTPIRIPAAEFTNSPALIYFVVALSVACFY 90
Query: 632 GILTTLASLSVIWKPIFSTKFLLHVAFWDVLIXXXXXXXXXXXXXXXYIGYKGNEHLQWN 453
I++T ++S K S LL++A D ++ Y+G KGN+ ++W
Sbjct: 91 SIVSTFVTVSAFKKHSCSAVLLLNLAIMDAVMVGIVASATGAGGGVAYLGLKGNKEVRWG 150
Query: 452 KVCSIFDKYCKHLAGXXXXXXXXXXXXXXXXXXXXXXXHKKI 327
K+C I+DK+C+H+ G +KKI
Sbjct: 151 KICHIYDKFCRHVGGAIAVSLFASVVLLLLSIISVLSLYKKI 192
>TAIR9_protein||AT4G20390.1 | Symbols: | integral membrane family protein |
chr4:11007068-11007869 FORWARD
Length = 198
Score = 66 bits (159), Expect = 3e-011
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 23/144 (15%)
Frame = -2
Query: 809 FAVDVALRFLVFAASLTSVLVMVTSKQTVFRGPIPLK----AKFDHSPALIYFVVALSVA 642
F +A ++ T LV+ T G +P+K AKF H+PA ++FV+A
Sbjct: 27 FMATLAAAIVMSLNKETKTLVVATI------GTVPIKATLTAKFQHTPAFVFFVIA---- 76
Query: 641 GLYGILTTLASLSVIWKPIFSTKF------LLHVAFWDVLIXXXXXXXXXXXXXXXYIGY 480
++ + +L +I IFS K LL +A D+L +G
Sbjct: 77 ---NVMVSFHNLLMIVVQIFSRKLEYKGLRLLSIAILDMLNATLVSAAANAAVFVAELGK 133
Query: 479 KGNEHLQWNKVCSIFDKYCKHLAG 408
GN+H +WNKVC F YC H AG
Sbjct: 134 NGNKHAKWNKVCDRFTTYCDHGAG 157
>TAIR9_protein||AT5G44550.1 | Symbols: | integral membrane family protein |
chr5:17942100-17943174 REVERSE
Length = 198
Score = 64 bits (155), Expect = 1e-010
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = -2
Query: 698 AKFDHSPALIYFVVALSVAGLYGILTTLASLSVIWKPIFSTKF-LLHVAFWDVLIXXXXX 522
AKFDH+PA ++FVVA ++ + +L + +L + + T F LL VA D+L
Sbjct: 62 AKFDHTPAFVFFVVANAMVSFHNLL--MIALQIFGGKMEFTGFRLLSVAILDMLNVTLIS 119
Query: 521 XXXXXXXXXXYIGYKGNEHLQWNKVCSIFDKYCKHLAG 408
+G GN+H +W+K+C F YC H AG
Sbjct: 120 AAANAAAFMAEVGKNGNKHARWDKICDRFATYCDHGAG 157
>TAIR9_protein||AT1G14160.1 | Symbols: | integral membrane family protein |
chr1:4840798-4841660 REVERSE
Length = 210
Score = 55 bits (131), Expect = 6e-008
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Frame = -2
Query: 791 LRFLVFAASLTSVLVMVTSKQTV--FRGPIPLKAKFDHSPALIYFVVALSVAGLYGILTT 618
LR ++ S L M T+ ++V + LK K+ P L++FVVA +++G Y +L+
Sbjct: 55 LRLFAVFGTIGSALAMGTTHESVVSLSQLVLLKVKYSDLPTLMFFVVANAISGGYLVLSL 114
Query: 617 LASLSVIWKPIFSTKFLLHVAFWDVLIXXXXXXXXXXXXXXXYIGYKGNEHLQWNKVCSI 438
S+ I+ T ++ + D ++ Y+ ++GN W +C
Sbjct: 115 PVSIFHIFSTQAKTSRIILLVV-DTVMLALVSSGASAATATVYLAHEGNTTANWPPICQQ 173
Query: 437 FDKYCKHLAG 408
FD +C+ ++G
Sbjct: 174 FDGFCERISG 183
>TAIR9_protein||AT5G06200.1 | Symbols: | integral membrane family protein |
chr5:1877333-1878116 FORWARD
Length = 203
Score = 54 bits (129), Expect = 1e-007
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = -2
Query: 800 DVALRFLVFAASLTSVLVMVTSKQTV--FRGPIPLKAKFDHSPALIYFVVALSVAGLYGI 627
D LR A+L + M TS +T+ F + +A +D P +FVVA+++ Y +
Sbjct: 45 DFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVVAIAIVAGYLV 104
Query: 626 LTTLASLSVIWKPIFSTKFLLHVAFWDVLIXXXXXXXXXXXXXXXYIGYKGNEHLQWNKV 447
L+ S+ I +P+ LL + D Y+ + GN + W +
Sbjct: 105 LSLPFSVVTIVRPLAVAPRLLLLVL-DTAALALDTAAASAAAAIVYLAHNGNTNTNWLPI 163
Query: 446 CSIFDKYCKHLAG 408
C F +C+ +G
Sbjct: 164 CQQFGDFCQKTSG 176
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,538,984,440
Number of Sequences: 33410
Number of Extensions: 1538984440
Number of Successful Extensions: 86971430
Number of sequences better than 0.0: 0
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