BLASTX 7.6.2
Query= RU06088 /QuerySize=492
(491 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G31985.1 | Symbols: | 60S ribosomal protein L... 82 1e-016
TAIR9_protein||AT2G25210.1 | Symbols: | 60S ribosomal protein L... 77 5e-015
TAIR9_protein||AT3G02190.1 | Symbols: | 60S ribosomal protein L... 77 5e-015
>TAIR9_protein||AT4G31985.1 | Symbols: | 60S ribosomal protein L39 (RPL39C) |
chr4:15469931-15470366 FORWARD
Length = 52
Score = 82 bits (201), Expect = 1e-016
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = +2
Query: 53 MPSHXXXXXXXXXXXXMRQNRPIPHWIRMRTDNTIRDNAKRRHWRRTKLGF* 208
MPSH MRQNRPIPHWIR+RTDNTIR NAKRRHWRRTKLGF*
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF* 52
>TAIR9_protein||AT2G25210.1 | Symbols: | 60S ribosomal protein L39 (RPL39A) |
chr2:10740157-10740379 FORWARD
Length = 45
Score = 77 bits (188), Expect = 5e-015
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +2
Query: 101 MRQNRPIPHWIRMRTDNTIRDNAKRRHWRRTKLGF* 208
MRQNRPIPHWIR+RTDNTIR NAKRRHWRRTKLGF*
Sbjct: 10 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF* 45
>TAIR9_protein||AT3G02190.1 | Symbols: | 60S ribosomal protein L39 (RPL39B) |
chr3:406005-406342 REVERSE
Length = 52
Score = 77 bits (188), Expect = 5e-015
Identities = 35/52 (67%), Positives = 37/52 (71%)
Frame = +2
Query: 53 MPSHXXXXXXXXXXXXMRQNRPIPHWIRMRTDNTIRDNAKRRHWRRTKLGF* 208
MPSH MRQNRPIP+WIR+RTDN IR NAKRRHWRRTKLGF*
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF* 52
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,538,984,440
Number of Sequences: 33410
Number of Extensions: 1538984440
Number of Successful Extensions: 86971430
Number of sequences better than 0.0: 0
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