BLASTX 7.6.2
Query= RU06238 /QuerySize=1303
(1302 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G03900.1 | Symbols: ATNAP4 | ATNAP4 (Arabidops... 332 3e-091
TAIR9_protein||AT3G58600.1 | Symbols: | FUNCTIONS IN: molecular... 128 1e-029
>TAIR9_protein||AT1G03900.1 | Symbols: ATNAP4 | ATNAP4 (Arabidopsis thaliana
non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement
of substances / transporter | chr1:991252-992852 FORWARD
Length = 273
Score = 332 bits (851), Expect = 3e-091
Identities = 177/267 (66%), Positives = 198/267 (74%), Gaps = 9/267 (3%)
Frame = -3
Query: 1132 HTLLVVREVAVYKIPPRSTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSSEL 953
HTLLVVREV+VYKIPPR+TSGGYKCGEWLQSDKIW+GRLRVVSCKDRCEIRLED NS +L
Sbjct: 14 HTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDL 73
Query: 952 FAACFVPPGQRETSVETVLDSSRYFVLKIEDGAGKHAFIGLGFAERNEAFDFNVALSDHD 773
FAACFV PG+RE SVE LDSSRYFVL+I+DG GK+AFIGLGFAERNEAFDFNVALSDH+
Sbjct: 74 FAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHE 133
Query: 772 KYVKRETXXXXXXXXXXXSHIEVHPAVNHRLKEGETIRINVKPKP-TSGTGMLSAAGLSG 596
KYV+RE +HI++HPAVNHRLKEGETIRINVKPKP T+GTGMLSAA LSG
Sbjct: 134 KYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA-LSG 192
Query: 595 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNDPVAARISSGGVKPPQDNARKSSDPFSDLSQ 416
NDPVA+RI+S G K + N +P SDLSQ
Sbjct: 193 -TGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASDGCKESRRN-----EPLSDLSQ 246
Query: 415 IERNLPPANGSGSSTKTNAV-GWAAF* 338
+++NLP GSGSS T A GWAAF*
Sbjct: 247 LKKNLPSTAGSGSSKSTGAASGWAAF* 273
>TAIR9_protein||AT3G58600.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: endocytosis; LOCATED IN: membrane; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1
NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match
is: ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase,
coupled to transmembrane movement of substances / transporter
(TAIR:AT1G03900.1); Has 329 Blast hits to 329 proteins in 94 species:
Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 43; Plants - 52;
Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). |
chr3:21668746-21670999 REVERSE
Length = 303
Score = 128 bits (320), Expect = 1e-029
Identities = 72/163 (44%), Positives = 96/163 (58%), Gaps = 9/163 (5%)
Frame = -3
Query: 1126 LLVVREVAVYKIPPRSTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSSELFA 947
L V E VY IPPR T+ Y+ EW + W G L+VVS + C I+L D + EL+A
Sbjct: 36 LFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLVDKTTGELYA 95
Query: 946 ACFVPPGQRETSVETVLDSSRYFVLKIE---DGAGKHAFIGLGFAERNEAFDFNVALSDH 776
F+ G+ VE V+DSSRYFVL++E DG +HAFIGLGF ER EA+DF AL DH
Sbjct: 96 QAFLREGELH-PVEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAYDFQAALHDH 154
Query: 775 DKYVKRETXXXXXXXXXXXSHIEVHPAVNHRLKEGETIRINVK 647
KY+ ++ H + +V++ LKEGETI + +K
Sbjct: 155 MKYLNKK-----KTAEEMEQHYQNTSSVDYSLKEGETIVLQLK 192
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,583,244,010
Number of Sequences: 33410
Number of Extensions: 1583244010
Number of Successful Extensions: 87018172
Number of sequences better than 0.0: 0
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