BLASTX 7.6.2
Query= RU06388 /QuerySize=798
(797 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G36240.1 | Symbols: | 60S ribosomal protein L... 207 7e-054
TAIR9_protein||AT3G18740.1 | Symbols: | 60S ribosomal protein L... 206 2e-053
TAIR9_protein||AT1G77940.1 | Symbols: | 60S ribosomal protein L... 205 3e-053
>TAIR9_protein||AT1G36240.1 | Symbols: | 60S ribosomal protein L30 (RPL30A) |
chr1:13614890-13616233 FORWARD
Length = 113
Score = 207 bits (526), Expect = 7e-054
Identities = 98/113 (86%), Positives = 108/113 (95%)
Frame = +2
Query: 278 MVAVKKTKKTHESINNRLALVMKSGKYTLGYKTVIDTLRSSKGKLIIISNNCPPLRKSEI 457
MVA KKTKK+HE IN+RLALVMKSGKYTLGYK+V+ +LRSSKGKLI+IS+NCPPLR+SEI
Sbjct: 1 MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 458 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKTLPGDQ* 616
EYYAMLAKVGVHHYN NNVDLGTACGKYFRVSCLSI+DPGDSDIIK+LPGDQ*
Sbjct: 61 EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ* 113
>TAIR9_protein||AT3G18740.1 | Symbols: | 60S ribosomal protein L30 (RPL30C) |
chr3:6453437-6453870 FORWARD
Length = 113
Score = 206 bits (523), Expect = 2e-053
Identities = 98/113 (86%), Positives = 107/113 (94%)
Frame = +2
Query: 278 MVAVKKTKKTHESINNRLALVMKSGKYTLGYKTVIDTLRSSKGKLIIISNNCPPLRKSEI 457
MVA KK KK+HE IN+RLALVMKSGKYTLGYK+V+ +LRSSKGKLI+IS+NCPPLR+SEI
Sbjct: 1 MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 458 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKTLPGDQ* 616
EYYAMLAKVGVH YNGNNVDLGTACGKYFRVSCLSI+DPGDSDIIKTLPGDQ*
Sbjct: 61 EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ* 113
>TAIR9_protein||AT1G77940.1 | Symbols: | 60S ribosomal protein L30 (RPL30B) |
chr1:29304116-29305288 REVERSE
Length = 113
Score = 205 bits (521), Expect = 3e-053
Identities = 96/113 (84%), Positives = 106/113 (93%)
Frame = +2
Query: 278 MVAVKKTKKTHESINNRLALVMKSGKYTLGYKTVIDTLRSSKGKLIIISNNCPPLRKSEI 457
MV KKTKK+HE IN+RLALVMKSGKYTLGYK+V+ +LR SKGKLI+IS NCPPLR+SEI
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60
Query: 458 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKTLPGDQ* 616
EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI+DPGDSDIIK++PGDQ*
Sbjct: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ* 113
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,597,800,050
Number of Sequences: 33410
Number of Extensions: 1597800050
Number of Successful Extensions: 87032018
Number of sequences better than 0.0: 0
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