BLASTX 7.6.2
Query= RU06398 /QuerySize=1131
(1130 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G70170.1 | Symbols: MMP | MMP (MATRIX METALLOP... 119 5e-027
TAIR9_protein||AT2G45040.1 | Symbols: | matrix metalloproteinas... 102 4e-022
TAIR9_protein||AT4G16640.1 | Symbols: | matrix metalloproteinas... 99 6e-021
TAIR9_protein||AT1G24140.1 | Symbols: | matrixin family protein... 93 3e-019
TAIR9_protein||AT1G59970.1 | Symbols: | matrixin family protein... 84 1e-016
>TAIR9_protein||AT1G70170.1 | Symbols: MMP | MMP (MATRIX METALLOPROTEINASE);
metalloendopeptidase/ metallopeptidase | chr1:26424005-26425141
FORWARD
Length = 379
Score = 119 bits (296), Expect = 5e-027
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Frame = -1
Query: 659 KPKWPSSKYHLSYAFFPGTP--SQATGAIAQAFATWARSTHFKFSQAQNYQNADVKISFH 486
+P+WP ++ L+YAF P P + ++AF W+ T F+ ++++ +D+ I F+
Sbjct: 161 EPRWPRNRRDLTYAFDPKNPLTEEVKSVFSRAFGRWSDVTALNFTLSESFSTSDITIGFY 220
Query: 485 RGNHGDGRNFDGPGGVLAHAFYPTDGRFHFDAAENWSVG-------AKPGAYDLESVAXX 327
G+HGDG FDG G LAHAF P G+FH DA ENW V + A DLESVA
Sbjct: 221 TGDHGDGEPFDGVLGTLAHAFSPPSGKFHLDADENWVVSGDLDSFLSVTAAVDLESVAVH 280
Query: 326 XXXXXXXXXXSSVKGAIMSATISPGVTLKSLHGDDIQGIKALY 198
SSV+ +IM TI+ G L DD++GI+ LY
Sbjct: 281 EIGHLLGLGHSSVEESIMYPTITTGKRKVDLTNDDVEGIQYLY 323
Score = 72 bits (176), Expect = 4e-013
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Frame = -3
Query: 1005 FEFLEHLKGCQQGDKVKGINDLKKYLHNFGYLNYKNYIHSXXXXXXXXXXXAVKTYQLNF 826
++ + GC G V G+ +KKY FGY+ + + + AV+ YQ NF
Sbjct: 41 WDAFSNFTGCHHGQNVDGLYRIKKYFQRFGYIP-ETFSGNFTDDFDDILKAAVELYQTNF 99
Query: 825 HLKSTGTLDDKTISQMMMPRCGVPDIVNGTTSMRSTQKHRHGSIHTTVHYSF 670
+L TG LD TI +++PRCG PD+VNGT+ M HG T +F
Sbjct: 100 NLNVTGELDALTIQHIVIPRCGNPDVVNGTSLM-------HGGRRKTFEVNF 144
>TAIR9_protein||AT2G45040.1 | Symbols: | matrix metalloproteinase |
chr2:18577693-18578721 FORWARD
Length = 343
Score = 102 bits (254), Expect = 4e-022
Identities = 62/165 (37%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Frame = -1
Query: 659 KPKWPSS-KYHLSYAFFPG------TPSQATGAIAQAFATWARSTHFKFSQAQNYQNADV 501
+P+W L+YAF P+ +AF WA F + ++Y AD+
Sbjct: 131 RPRWTRDVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFGKWASVIPVSFIETEDYVIADI 190
Query: 500 KISFHRGNHGDGRNFDGPGGVLAHAFYPTDGRFHFDAAENWSVG----AKPGAYDLESVA 333
KI F G+HGDG FDG GVLAH F P +GR H D AE W+V A DLESVA
Sbjct: 191 KIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAETWAVDFDEEKSSVAVDLESVA 250
Query: 332 XXXXXXXXXXXXSSVKGAIMSATISPGVTLKSLHGDDIQGIKALY 198
SSVK A M T+ P +L+ DD+ G+++LY
Sbjct: 251 VHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVVGVQSLY 295
>TAIR9_protein||AT4G16640.1 | Symbols: | matrix metalloproteinase, putative |
chr4:9367396-9368490 REVERSE
Length = 365
Score = 99 bits (244), Expect = 6e-021
Identities = 60/165 (36%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Frame = -1
Query: 659 KPKWPSSKYHLSYAFFPG------TPSQATGAIAQAFATWARSTHFKFSQAQNYQNADVK 498
KPKW ++ L+YA T +AF+ W+ F + ++ AD+K
Sbjct: 156 KPKW--NRDTLTYAISKTHKLDYLTSEDVKTVFRRAFSQWSSVIPVSFEEVDDFTTADLK 213
Query: 497 ISFHRGNHGDGRNFDGPGGVLAHAFYPTDGRFHFDAAENWSV-----GAKPGAYDLESVA 333
I F+ G+HGDG FDG G LAHAF P +GR H DAAE W V G+ A DLESVA
Sbjct: 214 IGFYAGDHGDGLPFDGVLGTLAHAFAPENGRLHLDAAETWIVDDDLKGSSEVAVDLESVA 273
Query: 332 XXXXXXXXXXXXSSVKGAIMSATISPGVTLKSLHGDDIQGIKALY 198
SS + A+M ++ P L DD+ G+ LY
Sbjct: 274 THEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLTVDDVAGVLKLY 318
Score = 63 bits (152), Expect = 3e-010
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Frame = -3
Query: 1017 NSSPFEFLEHLKGCQQGDKVKGINDLKKYLHNFGYLNYKNYIHSXXXXXXXXXXXAVKTY 838
++S + L Q G V G+++LK+YLH FGY+N + I S A+ Y
Sbjct: 48 SNSTWHDFSRLVDVQIGSHVSGVSELKRYLHRFGYVNDGSEIFS--DVFDGPLESAISLY 105
Query: 837 QLNFHLKSTGTLDDKTISQMMMPRCGVPDIVNGTTSMRSTQKHRHGSIHTT 685
Q N L TG LD T++ M +PRCGV D T M H + H T
Sbjct: 106 QENLGLPITGRLDTSTVTLMSLPRCGVSD-----THMTINNDFLHTTAHYT 151
>TAIR9_protein||AT1G24140.1 | Symbols: | matrixin family protein |
chr1:8536131-8537285 REVERSE
Length = 385
Score = 93 bits (229), Expect = 3e-019
Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = -1
Query: 671 FLMEKPKWPSSKYHLSYAFFP--GTPSQATGAIAQAFATWARSTHFKFSQAQNYQNADVK 498
F +P+WP ++ L+YAF P + ++AF W T F++ + + +D+
Sbjct: 161 FFPGEPRWPRNRRDLTYAFDPRNALTEEVKSVFSRAFTRWEEVTPLTFTRVERFSTSDIS 220
Query: 497 ISFHRGNHGDGRNFDGPGGVLAHAFYPTDGRFHFDAAENWSVGAKPG 357
I F+ G HGDG FDGP LAHAF P G FH D ENW V + G
Sbjct: 221 IGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLDGEENWIVSGEGG 267
Score = 88 bits (216), Expect = 1e-017
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Frame = -3
Query: 1029 NATANSSPFEFLEHLKGCQQGDKVKGINDLKKYLHNFGYLNYKNYIHSXXXXXXXXXXXA 850
NAT N P+ + GC G K G+ LK+Y +FGY+ N + A
Sbjct: 37 NATGN--PWNSFLNFTGCHAGKKYDGLYMLKQYFQHFGYITETNLSGNFTDDFDDILKNA 94
Query: 849 VKTYQLNFHLKSTGTLDDKTISQMMMPRCGVPDIVNGTTSMRSTQK-------HRHGSIH 691
V+ YQ NF L TG LD+ T+ +++PRCG PD+VNGT++M S +K R H
Sbjct: 95 VEMYQRNFQLNVTGVLDELTLKHVVIPRCGNPDVVNGTSTMHSGRKTFEVSFAGRGQRFH 154
Query: 690 TTVHYSFPNGKTK 652
HYSF G+ +
Sbjct: 155 AVKHYSFFPGEPR 167
>TAIR9_protein||AT1G59970.1 | Symbols: | matrixin family protein |
chr1:22073601-22074683 FORWARD
Length = 361
Score = 84 bits (207), Expect = 1e-016
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = -1
Query: 671 FLMEKPKWPSSKYHLSYAFFP--GTPSQATGAIAQAFATWARSTHFKFSQAQNYQNADVK 498
F KP+WP K L+YAF P + ++AF WA T F+++++ AD+
Sbjct: 145 FFPGKPRWPKRKRDLTYAFAPQNNLTDEVKRVFSRAFTRWAEVTPLNFTRSESILRADIV 204
Query: 497 ISFHRGNHGDGRNFDGPGGVLAHAFYPTDGRFHFDAAENWSV 372
I F G HGDG FDG G LAHA P G H D E+W +
Sbjct: 205 IGFFSGEHGDGEPFDGAMGTLAHASSPPTGMLHLDGDEDWLI 246
Score = 81 bits (199), Expect = 1e-015
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Frame = -3
Query: 1029 NATANSSPFEFLEHLKGCQQGDKVKGINDLKKYLHNFGYLNYKNYIHSXXXXXXXXXXXA 850
NAT N+ +E L GC G+ + G++ LK+Y FGY+ + A
Sbjct: 36 NATQNA--WETFSKLAGCHIGENINGLSKLKQYFRRFGYITTTG---NCTDDFDDVLQSA 90
Query: 849 VKTYQLNFHLKSTGTLDDKTISQMMMPRCGVPDIVNGTTSMRSTQKHRHGSIHTTVHYSF 670
+ TYQ NF+LK TG LD T+ Q++ PRCG PD+++G + M + + TT YSF
Sbjct: 91 INTYQKNFNLKVTGKLDSSTLRQIVKPRCGNPDLIDGVSEMNGGK-----ILRTTEKYSF 145
Query: 669 PNGKTK 652
GK +
Sbjct: 146 FPGKPR 151
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,597,800,050
Number of Sequences: 33410
Number of Extensions: 1597800050
Number of Successful Extensions: 87032018
Number of sequences better than 0.0: 0
|