BLASTX 7.6.2
Query= RU06785 /QuerySize=656
(655 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G21300.1 | Symbols: | pentatricopeptide (PPR)... 97 6e-021
TAIR9_protein||AT5G56310.1 | Symbols: | pentatricopeptide (PPR)... 97 8e-021
TAIR9_protein||AT1G06140.1 | Symbols: | pentatricopeptide (PPR)... 95 3e-020
TAIR9_protein||AT4G02750.1 | Symbols: | pentatricopeptide (PPR)... 94 5e-020
TAIR9_protein||AT2G13600.1 | Symbols: | pentatricopeptide (PPR)... 94 8e-020
TAIR9_protein||AT1G15510.1 | Symbols: | pentatricopeptide (PPR)... 92 3e-019
TAIR9_protein||AT3G05340.1 | Symbols: | pentatricopeptide (PPR)... 91 5e-019
TAIR9_protein||AT3G15130.1 | Symbols: | pentatricopeptide (PPR)... 90 9e-019
TAIR9_protein||AT1G09410.1 | Symbols: | pentatricopeptide (PPR)... 90 1e-018
TAIR9_protein||AT2G29760.1 | Symbols: | pentatricopeptide (PPR)... 89 2e-018
TAIR9_protein||AT4G16835.1 | Symbols: | pentatricopeptide (PPR)... 89 3e-018
TAIR9_protein||AT1G20230.1 | Symbols: | pentatricopeptide (PPR)... 88 4e-018
TAIR9_protein||AT5G44230.1 | Symbols: | pentatricopeptide (PPR)... 88 5e-018
TAIR9_protein||AT3G49140.1 | Symbols: | EXPRESSED IN: 23 plant ... 87 6e-018
TAIR9_protein||AT3G49140.2 | Symbols: | EXPRESSED IN: 22 plant ... 87 6e-018
TAIR9_protein||AT4G13650.1 | Symbols: | pentatricopeptide (PPR)... 87 6e-018
TAIR9_protein||AT2G22070.1 | Symbols: | pentatricopeptide (PPR)... 87 8e-018
TAIR9_protein||AT4G20770.1 | Symbols: | pentatricopeptide (PPR)... 86 1e-017
TAIR9_protein||AT3G49170.1 | Symbols: EMB2261 | EMB2261 (embryo ... 86 2e-017
TAIR9_protein||AT4G30700.1 | Symbols: | pentatricopeptide (PPR)... 86 2e-017
TAIR9_protein||AT5G40410.1 | Symbols: | INVOLVED IN: biological... 86 2e-017
TAIR9_protein||AT1G50270.1 | Symbols: | pentatricopeptide (PPR)... 85 3e-017
TAIR9_protein||AT2G22410.1 | Symbols: | pentatricopeptide (PPR)... 85 3e-017
TAIR9_protein||AT2G21090.1 | Symbols: | pentatricopeptide (PPR)... 85 4e-017
TAIR9_protein||AT3G14330.1 | Symbols: | pentatricopeptide (PPR)... 85 4e-017
TAIR9_protein||AT4G21065.1 | Symbols: | FUNCTIONS IN: molecular... 85 4e-017
TAIR9_protein||AT4G21065.2 | Symbols: | FUNCTIONS IN: molecular... 85 4e-017
TAIR9_protein||AT5G04780.1 | Symbols: | INVOLVED IN: biological... 85 4e-017
TAIR9_protein||AT3G15930.1 | Symbols: | pentatricopeptide (PPR)... 84 5e-017
TAIR9_protein||AT4G16470.1 | Symbols: | INVOLVED IN: biological... 84 9e-017
>TAIR9_protein||AT4G21300.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:11336479-11339052 FORWARD
Length = 858
Score = 97 bits (241), Expect = 6e-021
Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+TE+YGI P EH+AC DL GRAG L EA + +MPF +A +W LLGACRLH++
Sbjct: 669 SMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNV 728
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
LA A+ L++LD +SG YVL++N ++N + E
Sbjct: 729 ELAEVASSKLMDLDPSNSGYYVLISNAHANAREWE 763
>TAIR9_protein||AT5G56310.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr5:22802322-22803914 FORWARD
Length = 531
Score = 97 bits (240), Expect = 8e-021
Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ YGI+P EH+ C DLLGRAG L+EA +I +MPFK+NAAIW +LL A +H D
Sbjct: 376 SMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDL 435
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQ 38
L A L++L+ ++SG+Y+LLAN YSN G+
Sbjct: 436 ELGERALSELIKLEPNNSGNYMLLANLYSNLGR 468
>TAIR9_protein||AT1G06140.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:1864796-1866472 FORWARD
Length = 559
Score = 95 bits (235), Expect = 3e-020
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+T +YG+ P EH+AC DLLGRAG + EA++ ID MP K A+ W ALL ACR+H++
Sbjct: 438 SMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEV 497
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQLEL 29
+LAG A LL ++ + S YVLL+N Y++ G E+
Sbjct: 498 DLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEM 533
>TAIR9_protein||AT4G02750.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:1221116-1223461 REVERSE
Length = 782
Score = 94 bits (233), Expect = 5e-020
Identities = 45/93 (48%), Positives = 68/93 (73%), Gaps = 2/93 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
++T++YG+ P +H+AC DLLGRAGLL++A NL+ MPF+ +AAIW LLGA R+H +
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQ 38
LA AA + ++ ++SG YVLL+N Y++ G+
Sbjct: 595 ELAETAADKIFAMEPENSGMYVLLSNLYASSGR 627
>TAIR9_protein||AT2G13600.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr2:5671493-5673586 FORWARD
Length = 698
Score = 94 bits (231), Expect = 8e-020
Identities = 42/95 (44%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+T ++G+ P +H+ C DLLGRAG L+EA+++I+ MP + ++ IW +LL AC++HR+
Sbjct: 518 SMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNI 577
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
L + A LLE++ +SG YVLL+N Y+ G+ E
Sbjct: 578 TLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWE 612
>TAIR9_protein||AT1G15510.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:5329111-5331711 FORWARD
Length = 867
Score = 92 bits (226), Expect = 3e-019
Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Frame = -1
Query: 301 ENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLA 128
E+YG+ P +H+AC DLLGRAG L+EA I MP + A+W ALL ACR+H +L
Sbjct: 625 EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLG 684
Query: 127 GFAARNLLELDLDDSGSYVLLANTYSNCGQ 38
+A+++ ELD G Y+LL N Y++CG+
Sbjct: 685 ELSAQHIFELDKKSVGYYILLCNLYADCGK 714
>TAIR9_protein||AT3G05340.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr3:1524071-1526047 REVERSE
Length = 659
Score = 91 bits (224), Expect = 5e-019
Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Frame = -1
Query: 349 IHILDFVIEILE*SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIW 176
+ ++D E+L + E +GI P EH+ C D+LGRAGLLKEA++ ID++P K + IW
Sbjct: 471 VGLIDKGRELLN-EMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIW 529
Query: 175 WALLGACRLHRDYNLAGFAARNLLELDLDDSGSYVLLANTYSNCGQ 38
ALLGAC H D + +AA L + D S +++L+AN YS+ G+
Sbjct: 530 QALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGK 575
>TAIR9_protein||AT3G15130.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr3:5097153-5099222 REVERSE
Length = 690
Score = 90 bits (222), Expect = 9e-019
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Frame = -1
Query: 307 ITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYN 134
+ E +GI P EH+AC DLLGRAG LKEA++LID MP K N IW LL CR+H D
Sbjct: 440 LLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIE 499
Query: 133 LAGFAARNLLELDLDDSGSYVLLANTYSNCG 41
L + LL +D + +YV+++N Y G
Sbjct: 500 LGKEVGKILLRIDAKNPANYVMMSNLYGQAG 530
>TAIR9_protein||AT1G09410.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:3035443-3037560 FORWARD
Length = 706
Score = 90 bits (221), Expect = 1e-018
Identities = 40/93 (43%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ +G+ P H+AC D+LGRAG EA +ID+M + +AA+W +LLGACR H
Sbjct: 458 SMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQL 517
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQ 38
++A F A+ L+E++ ++SG+Y+LL+N Y++ G+
Sbjct: 518 DVAEFCAKKLIEIEPENSGTYILLSNMYASQGR 550
>TAIR9_protein||AT2G29760.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr2:12712884-12715100 FORWARD
Length = 739
Score = 89 bits (219), Expect = 2e-018
Identities = 43/91 (47%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = -1
Query: 298 NYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLAG 125
NYGI P +H+AC D+LGR+G L++A I+AMP + ++W ALLGAC++H + NLA
Sbjct: 495 NYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAE 554
Query: 124 FAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
A LLEL+ + G++VLL+N Y+ G+ E
Sbjct: 555 MACTRLLELEPRNDGAHVLLSNIYAKLGKWE 585
>TAIR9_protein||AT4G16835.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:9473021-9474803 FORWARD
Length = 576
Score = 89 bits (218), Expect = 3e-018
Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ +Y + P +H+ C DLLGRAG L+EA LI +MPF+ +AA++ LLGACR+H++
Sbjct: 324 SMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNV 383
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
LA FAA LL+L+ ++ YV LAN Y++ + E
Sbjct: 384 ELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWE 418
>TAIR9_protein||AT1G20230.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:7009570-7011852 FORWARD
Length = 761
Score = 88 bits (217), Expect = 4e-018
Identities = 43/91 (47%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = -1
Query: 307 ITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYN 134
++E YGI P EH++C +LLGRAG L+EA +LI MPF+ ++ +W ALL +CRL + +
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574
Query: 133 LAGFAARNLLELDLDDSGSYVLLANTYSNCG 41
LA AA L L+ ++ G+YVLL+N Y+ G
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKG 605
>TAIR9_protein||AT5G44230.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr5:17814336-17816309 FORWARD
Length = 658
Score = 88 bits (216), Expect = 5e-018
Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ + +G+ PT +H+ C DLLGR G L+EA LI M + + +W ALLGACR+H +
Sbjct: 410 SMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNP 469
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCG 41
+A AA +L EL+ D G+Y+LL+N Y++ G
Sbjct: 470 EIAEIAAEHLFELEPDIIGNYILLSNVYASAG 501
>TAIR9_protein||AT3G49140.1 | Symbols: | EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis
thaliana protein match is: EMB2758 (embryo defective 2758)
(TAIR:AT4G33990.1); Has 45368 Blast hits to 16108 proteins in 635
species: Archae - 60; Bacteria - 10333; Metazoa - 8211; Fungi - 3499;
Plants - 14806; Viruses - 492; Other Eukaryotes - 7967 (source: NCBI
BLink). | chr3:18212187-18217848 REVERSE
Length = 1216
Score = 87 bits (215), Expect = 6e-018
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Frame = -1
Query: 307 ITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYN 134
+T++Y I P EH AC DLLGRAG +KEA I M + N +W ALLGACR+H D +
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTD 495
Query: 133 LAGFAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
+ AA L +L + SG YVLL+N Y+ G+ E
Sbjct: 496 IGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWE 529
>TAIR9_protein||AT3G49140.2 | Symbols: | EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis
thaliana protein match is: EMB2758 (embryo defective 2758)
(TAIR:AT4G33990.1). | chr3:18213981-18217848 REVERSE
Length = 897
Score = 87 bits (215), Expect = 6e-018
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Frame = -1
Query: 307 ITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYN 134
+T++Y I P EH AC DLLGRAG +KEA I M + N +W ALLGACR+H D +
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTD 495
Query: 133 LAGFAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
+ AA L +L + SG YVLL+N Y+ G+ E
Sbjct: 496 IGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWE 529
>TAIR9_protein||AT4G13650.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:7939611-7942898 REVERSE
Length = 1065
Score = 87 bits (215), Expect = 6e-018
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ YG++P EH+ C D+L RAGLL A+ I MP K +A +W LL AC +H++
Sbjct: 818 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 877
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYS 50
+ FAA +LLEL+ +DS +YVLL+N Y+
Sbjct: 878 EIGEFAAHHLLELEPEDSATYVLLSNLYA 906
>TAIR9_protein||AT2G22070.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr2:9383602-9385962 FORWARD
Length = 787
Score = 87 bits (214), Expect = 8e-018
Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Frame = -1
Query: 289 INPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLAGFAA 116
I PT H+AC DL GRAGLL+EA+ I+ MP + + W +LL ACR+H++ +L AA
Sbjct: 547 IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAA 606
Query: 115 RNLLELDLDDSGSYVLLANTYSNCGQLE 32
LL L+ ++SG+Y LAN YS CG+ E
Sbjct: 607 ERLLLLEPENSGAYSALANLYSACGKWE 634
>TAIR9_protein||AT4G20770.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:11130762-11132984 REVERSE
Length = 741
Score = 86 bits (212), Expect = 1e-017
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Frame = -1
Query: 328 IEILE*SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGAC 155
+EIL S+ +GI P +H+ C D LGRAG L++A L +A P+KS++ +W LL +C
Sbjct: 606 LEILS-SMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSC 664
Query: 154 RLHRDYNLAGFAARNLLELDLDDSGSYVLLANTYSNCGQ 38
R+H D +LA A L+ LD S +YVLL+NTYS+ Q
Sbjct: 665 RVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQ 703
>TAIR9_protein||AT3G49170.1 | Symbols: EMB2261 | EMB2261 (embryo defective 2261)
| chr3:18226954-18229600 REVERSE
Length = 851
Score = 86 bits (210), Expect = 2e-017
Identities = 42/95 (44%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ E++ I P EH+AC DLL RAGLL +A I+ MPF+++ +W LGACR+H +
Sbjct: 600 SMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNT 659
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
L AAR +LELD ++ +Y+ L+N Y+ G+ E
Sbjct: 660 ELGKLAARKILELDPNEPAAYIQLSNIYACAGKWE 694
>TAIR9_protein||AT4G30700.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr4:14962617-14964995 REVERSE
Length = 793
Score = 86 bits (210), Expect = 2e-017
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ YG P+ +H+AC D+LGRAG L+ A I+AM + +++W LLGACR+H+D
Sbjct: 546 SMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDT 605
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYS 50
NLA + L ELD D+ G +VLL+N +S
Sbjct: 606 NLARTVSEKLFELDPDNVGYHVLLSNIHS 634
>TAIR9_protein||AT5G40410.1 | Symbols: | INVOLVED IN: biological_process
unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein match is:
pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1);
Has 12213 Blast hits to 4641 proteins in 127 species: Archae - 0;
Bacteria - 0; Metazoa - 61; Fungi - 12; Plants - 12006; Viruses - 0;
Other Eukaryotes - 134 (source: NCBI BLink). | chr5:16171385-16173211
FORWARD
Length = 609
Score = 86 bits (210), Expect = 2e-017
Identities = 41/92 (44%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
++++ Y I+P +H++C DLLGR+GLL++A LI MP + ++ +W ALLGACR+++D
Sbjct: 361 TMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDT 420
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCG 41
L AA L EL+ D +YV+L+N YS G
Sbjct: 421 QLGTKAAERLFELEPRDGRNYVMLSNIYSASG 452
>TAIR9_protein||AT1G50270.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr1:18622044-18623834 FORWARD
Length = 597
Score = 85 bits (209), Expect = 3e-017
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ + + P +H+AC DL GR GLL+EA+ LI+ MP + +W AL G+C LH+DY
Sbjct: 432 SMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDY 491
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYS 50
L +AA +++L SG Y LLAN YS
Sbjct: 492 ELGKYAASRVIKLQPSHSGRYTLLANLYS 520
>TAIR9_protein||AT2G22410.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr2:9509035-9511080 FORWARD
Length = 682
Score = 85 bits (209), Expect = 3e-017
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Frame = -1
Query: 295 YGINPTCEHFA--CDLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLAGF 122
+ +NP +H++ DLLGRAGLL+EA L+++MP +++AA+W ALL CR+H + L
Sbjct: 520 FNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEK 579
Query: 121 AARNLLELDLDDSGSYVLLANTYSNCGQLE 32
AA+ LLELD DSG YVLL Y E
Sbjct: 580 AAKKLLELDPSDSGIYVLLDGMYGEANMWE 609
>TAIR9_protein||AT2G21090.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr2:9045695-9047488 REVERSE
Length = 598
Score = 85 bits (208), Expect = 4e-017
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+T +GI P EH+AC DLLGRAG KE I+ MPF+ + IW A+LG CR+H +
Sbjct: 438 SMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNE 497
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQLEL 29
L AA L++LD + S Y+LL++ Y++ G+ EL
Sbjct: 498 ELGKKAADELIKLDPESSAPYILLSSIYADHGKWEL 533
>TAIR9_protein||AT3G14330.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr3:4779688-4782451 REVERSE
Length = 711
Score = 85 bits (208), Expect = 4e-017
Identities = 41/104 (39%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Frame = -1
Query: 352 DIHILDFVIEILE*SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAI 179
D + ++ + + E TE + ++P EH+AC D+LGRAG +KEA +I+ MPFK +A+I
Sbjct: 450 DTGLTEYGLSLFERMKTE-FRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASI 508
Query: 178 WWALLGACRLHRDYNLAGFAARNLLELDLDDSGSYVLLANTYSN 47
W +LL +CRLH + ++ AA+ L L+ + G+YV+++N Y++
Sbjct: 509 WGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYAD 552
>TAIR9_protein||AT4G21065.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide
repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match
is: CRR28 (CHLORORESPIRATORY REDUCTION28); endonuclease
(TAIR:AT1G59720.1); Has 14270 Blast hits to 5372 proteins in 184
species: Archae - 1; Bacteria - 4; Metazoa - 153; Fungi - 82; Plants -
13714; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). |
chr4:11245976-11247763 FORWARD
Length = 596
Score = 85 bits (208), Expect = 4e-017
Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = -1
Query: 301 ENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLA 128
E Y I P EHF C DLL RAG +K+A I +MP + N IW LLGAC +H D +LA
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411
Query: 127 GFAARNLLELDLDDSGSYVLLANTYSN 47
FA +L+L+ + SG YVLL+N Y++
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNMYAS 438
>TAIR9_protein||AT4G21065.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro
DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide (PPR)
repeat-containing protein (TAIR:AT4G33170.1); Has 16184 Blast hits to
5257 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 118;
Fungi - 47; Plants - 15742; Viruses - 0; Other Eukaryotes - 273
(source: NCBI BLink). | chr4:11246375-11247763 FORWARD
Length = 463
Score = 85 bits (208), Expect = 4e-017
Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = -1
Query: 301 ENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLA 128
E Y I P EHF C DLL RAG +K+A I +MP + N IW LLGAC +H D +LA
Sbjct: 219 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278
Query: 127 GFAARNLLELDLDDSGSYVLLANTYSN 47
FA +L+L+ + SG YVLL+N Y++
Sbjct: 279 EFARIQILQLEPNHSGDYVLLSNMYAS 305
>TAIR9_protein||AT5G04780.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis
thaliana protein match is: MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1)
(TAIR:AT5G52630.1); Has 13798 Blast hits to 4918 proteins in 150
species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 36; Plants -
13447; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink). |
chr5:1384564-1386447 FORWARD
Length = 628
Score = 85 bits (208), Expect = 4e-017
Identities = 41/90 (45%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Frame = -1
Query: 295 YGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLAGF 122
YG++P H++C D+LGRAGLL EA LI ++PF A+IW +LL +CR++++ LA
Sbjct: 386 YGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEV 445
Query: 121 AARNLLELDLDDSGSYVLLANTYSNCGQLE 32
AA L EL+ +++G++VLL+N Y+ Q E
Sbjct: 446 AAEKLFELEPENAGNHVLLSNIYAANKQWE 475
>TAIR9_protein||AT3G15930.1 | Symbols: | pentatricopeptide (PPR)
repeat-containing protein | chr3:5387444-5389690 FORWARD
Length = 688
Score = 84 bits (207), Expect = 5e-017
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = -1
Query: 298 NYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDYNLAG 125
++ I P+ H+ C D+LGRAGL+KEA ++ MP N+ +W ALLGA RLH D +A
Sbjct: 498 DHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAE 557
Query: 124 FAARNLLELDLDDSGSYVLLANTYSNC 44
AA+ +LEL+ D+ Y LL N Y+ C
Sbjct: 558 LAAKKILELEPDNGAVYALLCNIYAGC 584
>TAIR9_protein||AT4G16470.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant
structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal
differentiation and expansion stage, D bilateral stage, E expanded
cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22
(CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has
12729 Blast hits to 4676 proteins in 132 species: Archae - 0; Bacteria
- 0; Metazoa - 31; Fungi - 25; Plants - 12474; Viruses - 0; Other
Eukaryotes - 199 (source: NCBI BLink). | chr4:9287862-9289541 REVERSE
Length = 486
Score = 84 bits (205), Expect = 9e-017
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = -1
Query: 310 SITENYGINPTCEHFAC--DLLGRAGLLKEARNLIDAMPFKSNAAIWWALLGACRLHRDY 137
S+ +YGI P +H+A D LGRAG L+EA + P K + +W +LLGACR+H +
Sbjct: 319 SMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNV 378
Query: 136 NLAGFAARNLLELDLDDSGSYVLLANTYSNCGQLE 32
L AA LELD + G+YV+ AN Y++CG E
Sbjct: 379 KLLELAATKFLELDPTNGGNYVVFANGYASCGLRE 413
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,658,669,864
Number of Sequences: 33410
Number of Extensions: 1658669864
Number of Successful Extensions: 92048679
Number of sequences better than 0.0: 0
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