BLASTX 7.6.2
Query= RU06862 /QuerySize=339
(338 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G29060.1 | Symbols: | scarecrow transcription... 124 1e-029
TAIR9_protein||AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SC... 116 2e-027
TAIR9_protein||AT1G07520.1 | Symbols: | scarecrow transcription... 115 7e-027
TAIR9_protein||AT2G37650.1 | Symbols: | scarecrow-like transcri... 96 3e-021
TAIR9_protein||AT3G46600.1 | Symbols: | scarecrow transcription... 96 3e-021
TAIR9_protein||AT3G46600.2 | Symbols: | scarecrow transcription... 96 3e-021
TAIR9_protein||AT3G46600.3 | Symbols: | scarecrow transcription... 96 3e-021
TAIR9_protein||AT5G59450.1 | Symbols: | scarecrow-like transcri... 95 8e-021
TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a... 55 5e-009
TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a... 55 5e-009
TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription... 52 4e-008
>TAIR9_protein||AT2G29060.1 | Symbols: | scarecrow transcription factor family
protein | chr2:12481991-12486941 FORWARD
Length = 1337
Score = 124 bits (310), Expect = 1e-029
Identities = 64/110 (58%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDET-VEV 160
GRRLA YCKRFNVPFE+ AIASQNWE+I++EDL + NEVLAVN LR NL DET E
Sbjct: 1120 GRRLAEYCKRFNVPFEYKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEE 1179
Query: 159 NCPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYD 10
NCPRD+VLKLIR + PD F ++PF A++H+SAL+D
Sbjct: 1180 NCPRDAVLKLIRNMNPDVFIHAIVNGSF-NAPFFISRFKEAVYHYSALFD 1228
Score = 121 bits (301), Expect = 1e-028
Identities = 62/115 (53%), Positives = 82/115 (71%), Gaps = 14/115 (12%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
GRRLA+YC++FN+PFE+NAIA Q WESI++EDLK++ E +AVN + RF NLLDETV V+
Sbjct: 480 GRRLAKYCQKFNIPFEYNAIA-QKWESIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVH 538
Query: 156 CPRDSVLKLIRRLKPDYFC------SYYC*WCLQSSPFLCHSISGALFHFSALYD 10
PRD+VLKLIR++KPD F SY ++PF LFH+S+L+D
Sbjct: 539 SPRDTVLKLIRKIKPDVFIPGILSGSY-------NAPFFVTRFREVLFHYSSLFD 586
>TAIR9_protein||AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCL14
(SCARECROW-LIKE 14); transcription factor | chr1:2313828-2316137
REVERSE
Length = 770
Score = 116 bits (290), Expect = 2e-027
Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 2/109 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
G RLARYC+R NVPFE+NAIA Q WE+IQVEDLK+ + E + VN + RF NLLDETV VN
Sbjct: 554 GHRLARYCQRHNVPFEYNAIA-QKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVN 612
Query: 156 CPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYD 10
PRD+VLKLIR++ P+ F ++PF ALFH+SA++D
Sbjct: 613 SPRDAVLKLIRKINPNVFIPAIL-SGNYNAPFFVTRFREALFHYSAVFD 660
>TAIR9_protein||AT1G07520.1 | Symbols: | scarecrow transcription factor family
protein | chr1:2309718-2311805 REVERSE
Length = 696
Score = 115 bits (286), Expect = 7e-027
Identities = 60/110 (54%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETV-EV 160
GRRL YCKRF VPFE+NAIAS+NWE+I++E+ K+ NEVLAVN +LRF NL D E
Sbjct: 479 GRRLTEYCKRFGVPFEYNAIASKNWETIKMEEFKIRPNEVLAVNAVLRFKNLRDVIPGEE 538
Query: 159 NCPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYD 10
+CPRD LKLIR + P+ F S ++PF ALFH+SAL+D
Sbjct: 539 DCPRDGFLKLIRDMNPNVFLSSTVNGSF-NAPFFTTRFKEALFHYSALFD 587
>TAIR9_protein||AT2G37650.1 | Symbols: | scarecrow-like transcription factor 9
(SCL9) | chr2:15792623-15794779 FORWARD
Length = 719
Score = 96 bits (237), Expect = 3e-021
Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
G+RLA Y K F VPFE+ AIA + W++IQ+EDL ++R+E+ VNC+ R NL DE+V+V
Sbjct: 502 GQRLAAYAKLFGVPFEYKAIA-KKWDAIQLEDLDIDRDEITVVNCLYRAENLHDESVKVE 560
Query: 156 CPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYDAI 4
RD+VL LI ++ PD F + ++PF ALFHFS+++D +
Sbjct: 561 SCRDTVLNLIGKINPDLFV-FGIVNGAYNAPFFVTRFREALFHFSSIFDML 610
>TAIR9_protein||AT3G46600.1 | Symbols: | scarecrow transcription factor family
protein | chr3:17158048-17159799 FORWARD
Length = 584
Score = 96 bits (237), Expect = 3e-021
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
GRRL R+C +FNVPFE++ IA +NWE+I ++DL + E VNC+LR DETV +N
Sbjct: 368 GRRLKRFCDKFNVPFEYSFIA-KNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLN 426
Query: 156 CPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYD 10
PRD+ LKL R + PD F +SPF ALFH S+L+D
Sbjct: 427 SPRDTALKLFRDINPDLFVFAEING-TYNSPFFLTRFREALFHCSSLFD 474
>TAIR9_protein||AT3G46600.2 | Symbols: | scarecrow transcription factor family
protein | chr3:17158379-17159799 FORWARD
Length = 454
Score = 96 bits (237), Expect = 3e-021
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
GRRL R+C +FNVPFE++ IA +NWE+I ++DL + E VNC+LR DETV +N
Sbjct: 238 GRRLKRFCDKFNVPFEYSFIA-KNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLN 296
Query: 156 CPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYD 10
PRD+ LKL R + PD F +SPF ALFH S+L+D
Sbjct: 297 SPRDTALKLFRDINPDLFVFAEING-TYNSPFFLTRFREALFHCSSLFD 344
>TAIR9_protein||AT3G46600.3 | Symbols: | scarecrow transcription factor family
protein | chr3:17158052-17159799 FORWARD
Length = 552
Score = 96 bits (237), Expect = 3e-021
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
GRRL R+C +FNVPFE++ IA +NWE+I ++DL + E VNC+LR DETV +N
Sbjct: 336 GRRLKRFCDKFNVPFEYSFIA-KNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLN 394
Query: 156 CPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYD 10
PRD+ LKL R + PD F +SPF ALFH S+L+D
Sbjct: 395 SPRDTALKLFRDINPDLFVFAEING-TYNSPFFLTRFREALFHCSSLFD 442
>TAIR9_protein||AT5G59450.1 | Symbols: | scarecrow-like transcription factor 11
(SCL11) | chr5:23974808-23976640 FORWARD
Length = 611
Score = 95 bits (234), Expect = 8e-021
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
GRRL R+C +FNVPFEFN IA + WE+I +++L + E VNC+ R DETV ++
Sbjct: 385 GRRLKRFCDQFNVPFEFNFIA-KKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLD 443
Query: 156 CPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYD 10
PRD+VLKL R + PD F + +SPF ALFH+S+L+D
Sbjct: 444 SPRDTVLKLFRDINPDLFVFAEING-MYNSPFFMTRFREALFHYSSLFD 491
>TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 55 bits (132), Expect = 5e-009
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
G RLA+ K+FNVPFEFN++ S + ++ ++L V E LAVN ++ DE+V
Sbjct: 280 GNRLAKLAKQFNVPFEFNSV-SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTE 338
Query: 156 CPRDSVLKLIRRLKP 112
RD +L++++ L P
Sbjct: 339 NHRDRLLRMVKSLSP 353
>TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 55 bits (132), Expect = 5e-009
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
G RLA+ K+FNVPFEFN++ S + ++ ++L V E LAVN ++ DE+V
Sbjct: 280 GNRLAKLAKQFNVPFEFNSV-SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTE 338
Query: 156 CPRDSVLKLIRRLKP 112
RD +L++++ L P
Sbjct: 339 NHRDRLLRMVKSLSP 353
>TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription factor |
chr1:18737398-18739547 REVERSE
Length = 598
Score = 52 bits (124), Expect = 4e-008
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Frame = -3
Query: 336 GRRLARYCKRFNVPFEFNAIASQNWESIQVEDLKVERNEVLAVNCMLRFTNLLDETVEVN 157
G+RL + + VPFEF+ A E +++E L V E LAVN L ++ DE+V V
Sbjct: 387 GQRLGKLAEMCGVPFEFHGAALCCTE-VEIEKLGVRNGEALAVNFPLVLHHMPDESVTVE 445
Query: 156 CPRDSVLKLIRRLKPDYFCSYYC*WCLQSSPFLCHSISGALFHFSALYDAI 4
RD +L+L++ L P+ ++PFL + + H+ A++++I
Sbjct: 446 NHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVE-TMNHYLAVFESI 495
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,718,605,888
Number of Sequences: 33410
Number of Extensions: 1718605888
Number of Successful Extensions: 97032208
Number of sequences better than 0.0: 0
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