BLASTX 7.6.2
Query= RU06952 /QuerySize=950
(949 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B,... 65 7e-011
TAIR9_protein||AT5G03740.1 | Symbols: HD2C, HDT3 | HD2C (HISTONE... 63 3e-010
TAIR9_protein||AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B,... 60 2e-009
>TAIR9_protein||AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 |
HD2B (HISTONE DEACETYLASE 2B); histone deacetylase |
chr5:7534120-7536054 FORWARD
Length = 306
Score = 65 bits (156), Expect = 7e-011
Identities = 41/65 (63%), Positives = 45/65 (69%), Gaps = 8/65 (12%)
Frame = +1
Query: 397 KKRAQVSGSVKTPVSAKKAK---IVASTPQKTDGKKGGHTDTPHPAKK-GKTPATDKSKT 564
KKR S S KTPVS KKAK ASTPQKT+ KKGGHT TPHPAKK GK+P +
Sbjct: 208 KKRPNESVS-KTPVSGKKAKPAAAPASTPQKTEKKKGGHTATPHPAKKGGKSPV---NAN 263
Query: 565 QTPKS 579
Q+PKS
Sbjct: 264 QSPKS 268
>TAIR9_protein||AT5G03740.1 | Symbols: HD2C, HDT3 | HD2C (HISTONE DEACETYLASE
2C); histone deacetylase/ nucleic acid binding / transcription
repressor/ zinc ion binding | chr5:981994-983961 FORWARD
Length = 295
Score = 63 bits (151), Expect = 3e-010
Identities = 46/99 (46%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Frame = +1
Query: 397 KKRAQVSGSVKTPVSAKKAKIVASTPQKTDGKKGG-HTDTPHPAKK-------GKTPATD 552
KKR+ S K P S KKAK V TPQKTD KK H TPHP+K+ G T T
Sbjct: 198 KKRSAEPNSSKNPASNKKAKFV--TPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETS 255
Query: 553 KSKTQTPKSAXXXXXXXXXXXXXXXXXALQSHNKAKHSA 669
K + QTPKSA LQSH KAKHSA
Sbjct: 256 KQQ-QTPKSA-GAFGCKSCTRTFTSEMGLQSHTKAKHSA 292
>TAIR9_protein||AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 |
HD2B (HISTONE DEACETYLASE 2B); histone deacetylase |
chr5:7534120-7536054 FORWARD
Length = 307
Score = 60 bits (144), Expect = 2e-009
Identities = 41/66 (62%), Positives = 45/66 (68%), Gaps = 9/66 (13%)
Frame = +1
Query: 397 KKRAQVSGSVKTPVSAKKAK---IVASTPQKT-DGKKGGHTDTPHPAKK-GKTPATDKSK 561
KKR S S KTPVS KKAK ASTPQKT + KKGGHT TPHPAKK GK+P +
Sbjct: 208 KKRPNESVS-KTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPV---NA 263
Query: 562 TQTPKS 579
Q+PKS
Sbjct: 264 NQSPKS 269
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,718,605,888
Number of Sequences: 33410
Number of Extensions: 1718605888
Number of Successful Extensions: 97032208
Number of sequences better than 0.0: 0
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