BLASTX 7.6.2
Query= RU07288 /QuerySize=243
(242 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G05140.1 | Symbols: | transcription elongatio... 60 2e-010
TAIR9_protein||AT3G10820.1 | Symbols: | DNA binding / protein b... 56 4e-009
TAIR9_protein||AT5G09850.1 | Symbols: | transcription elongatio... 45 1e-005
>TAIR9_protein||AT5G05140.1 | Symbols: | transcription elongation
factor-related | chr5:1520353-1522297 FORWARD
Length = 437
Score = 60 bits (145), Expect = 2e-010
Identities = 37/77 (48%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = -3
Query: 240 IGKAVNRLRKHGSMKIRNLVRTLIDGWKVMVDEWVNTTTAI--ASGGTEXXXXXXXXXXX 67
IGKAVN LRKH S KIR L +TLI WK +VD+WVNTT I A G E
Sbjct: 181 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDE-- 238
Query: 66 XXFEEGLPTPPLDEGAF 16
EE P+ P D F
Sbjct: 239 ---EEAFPSLPYDVDIF 252
>TAIR9_protein||AT3G10820.1 | Symbols: | DNA binding / protein binding /
transcription regulator | chr3:3387358-3389026 FORWARD
Length = 289
Score = 56 bits (133), Expect = 4e-009
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -3
Query: 240 IGKAVNRLRKHGSMKIRNLVRTLIDGWKVMVDEWVNTTTAIASGGTEXXXXXXXXXXXXX 61
IGKAVN LR+H S KI L +TL WK +VD+W+NT +A GTE
Sbjct: 150 IGKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMA--GTEGTPESLNLSVIDE 207
Query: 60 FEEGLPTPPLD 28
EE P+PP D
Sbjct: 208 -EEAFPSPPHD 217
>TAIR9_protein||AT5G09850.1 | Symbols: | transcription elongation
factor-related | chr5:3063488-3065221 REVERSE
Length = 354
Score = 45 bits (104), Expect = 1e-005
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -3
Query: 240 IGKAVNRLRKHGSMKIRNLVRTLIDGWKVMVDEWV 136
IG+ VNR+RKH S +R L + L+ WK VDEWV
Sbjct: 166 IGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWV 200
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,781,210,414
Number of Sequences: 33410
Number of Extensions: 1781210414
Number of Successful Extensions: 102579658
Number of sequences better than 0.0: 0
|