BLASTX 7.6.2
Query= RU07818 /QuerySize=220
(219 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G03280.1 | Symbols: | transcription initiatio... 110 2e-025
TAIR9_protein||AT4G20340.1 | Symbols: | RNA polymerase II trans... 99 5e-022
TAIR9_protein||AT4G20810.1 | Symbols: | transcription initiatio... 65 1e-011
>TAIR9_protein||AT1G03280.1 | Symbols: | transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general transcription factor
TFIIE family protein | chr1:803635-806758 FORWARD
Length = 480
Score = 110 bits (274), Expect = 2e-025
Identities = 49/72 (68%), Positives = 62/72 (86%)
Frame = -3
Query: 217 CPNCGKRYNALDALQLISLEDEYFHCESCNGELVAESDKLASQDVGDGDSNARRQRREKL 38
CPNC ++YNALDAL+LIS+ D+ FHCE+CNGELV E +KL S++V DGD NARR+RRE L
Sbjct: 168 CPNCQRKYNALDALRLISMVDDSFHCENCNGELVVECNKLTSEEVVDGDDNARRRRRENL 227
Query: 37 KDMLQNMEVQLK 2
K+MLQ +EVQ+K
Sbjct: 228 KNMLQKLEVQMK 239
>TAIR9_protein||AT4G20340.1 | Symbols: | RNA polymerase II transcription
factor/ transcription initiation factor | chr4:10985011-10987748
FORWARD
Length = 476
Score = 99 bits (245), Expect = 5e-022
Identities = 45/72 (62%), Positives = 60/72 (83%)
Frame = -3
Query: 217 CPNCGKRYNALDALQLISLEDEYFHCESCNGELVAESDKLASQDVGDGDSNARRQRREKL 38
CPNC ++YNALDAL+LIS+ED+ FHCE+CNGELV E +KL S++V D NARR++REK+
Sbjct: 168 CPNCKRKYNALDALRLISMEDDSFHCENCNGELVMECNKLISEEVVDRGDNARRRQREKV 227
Query: 37 KDMLQNMEVQLK 2
K LQ++E +LK
Sbjct: 228 KVWLQDLEGELK 239
>TAIR9_protein||AT4G20810.1 | Symbols: | transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general transcription factor
TFIIE family protein | chr4:11141427-11143597 REVERSE
Length = 417
Score = 65 bits (156), Expect = 1e-011
Identities = 30/50 (60%), Positives = 39/50 (78%)
Frame = -3
Query: 151 YFHCESCNGELVAESDKLASQDVGDGDSNARRQRREKLKDMLQNMEVQLK 2
+FHCE+CNGELV E +KL S++V S+ R RR+ LKD+LQNMEV+LK
Sbjct: 148 FFHCENCNGELVMECNKLTSEEVVVDGSDNPRSRRDHLKDLLQNMEVRLK 197
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,869,051,913
Number of Sequences: 33410
Number of Extensions: 1869051913
Number of Successful Extensions: 102944909
Number of sequences better than 0.0: 0
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