BLASTX 7.6.2
Query= RU08254 /QuerySize=1342
(1341 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G05100.1 | Symbols: | nucleic acid binding | ... 131 2e-030
TAIR9_protein||AT3G10770.1 | Symbols: | nucleic acid binding | ... 129 6e-030
TAIR9_protein||AT3G10770.2 | Symbols: | nucleic acid binding | ... 129 6e-030
TAIR9_protein||AT3G56680.1 | Symbols: | nucleic acid binding | ... 126 4e-029
TAIR9_protein||AT2G40960.1 | Symbols: | nucleic acid binding | ... 123 3e-028
>TAIR9_protein||AT5G05100.1 | Symbols: | nucleic acid binding |
chr5:1505461-1506940 REVERSE
Length = 325
Score = 131 bits (327), Expect = 2e-030
Identities = 82/179 (45%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Frame = +1
Query: 250 VDQFLREALQNPRERLSILRMEQDVEKFIRDPIQQQLEFQQLPTSYLRLAAHRVAQHYAL 429
VD FL EALQNPR RL+ILRME D++KF + P QQQ EFQ LPTSYLRL AHRVAQHY L
Sbjct: 11 VDPFLVEALQNPRHRLTILRMELDIQKFFQSPEQQQYEFQPLPTSYLRLIAHRVAQHYGL 70
Query: 430 QSMVLLDNNLPDGSGSRIIVRKTPECRLPLIRLADIPVSLPSEESGVT--KVAIKQRPQK 603
+ L + DGSG+RI+ KT E R P + L++IPV P K+AIK RP +
Sbjct: 71 FTTALEGGGV-DGSGNRILATKTVESRYPYVCLSEIPVKQPEIHGRPEGFKIAIKPRPNR 129
Query: 604 RSQMXXXXXXXXXXXXXXXXVEERKEEYXXXXX---XXXXXXXXXSGSTSGKPESEPRL 771
+ VEERKEEY ST P PRL
Sbjct: 130 GA--GGSGSGSGVEKNLLRSVEERKEEYDKARARIFNSPSSSDSEDSSTRAPPPPYPRL 186
>TAIR9_protein||AT3G10770.1 | Symbols: | nucleic acid binding |
chr3:3372461-3374026 REVERSE
Length = 334
Score = 129 bits (322), Expect = 6e-030
Identities = 80/151 (52%), Positives = 95/151 (62%), Gaps = 10/151 (6%)
Frame = +1
Query: 250 VDQFLREALQNPRERLSILRMEQDVEKFIRDPIQQQLEFQQLPTSYLRLAAHRVAQHYAL 429
VD FL EALQNPR RL+ILRME D++KF ++P Q Q EF PTSYLRLAAHRVAQHY L
Sbjct: 11 VDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHRVAQHYGL 70
Query: 430 QSMVLLDN--NLPDGSGSRIIVRKTPECRLPLIRLADIPVSLPSEESGVT---KVAIKQR 594
+M LDN DGS +RI+V KT E R P + L++IPV P E+G K+AIK R
Sbjct: 71 VTMA-LDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQP--ENGRPEGFKIAIKPR 127
Query: 595 PQKRSQMXXXXXXXXXXXXXXXXVEERKEEY 687
P++ S VEERKEEY
Sbjct: 128 PKRGS--GCGGSGSGVQQNLLRSVEERKEEY 156
Score = 55 bits (131), Expect = 9e-008
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Frame = +1
Query: 940 NRVAIFRDREIDRKDPDYDRSYDRYMQRFDPGFGF-----SGGPYTIQPMYTPALNYNTE 1104
+RVAI RDRE DR DPDYDRSYDRY+ DP + + SG ++ P++ P ++
Sbjct: 215 SRVAIIRDREKDRYDPDYDRSYDRYV--VDPAYRYVRVMPSGQSFSPMPIHIPF--HDGF 270
Query: 1105 FPQLGSTHGPQISTEHQPRP 1164
FP + H ++ H P
Sbjct: 271 FPHMPRGHQANLNYGHPLNP 290
>TAIR9_protein||AT3G10770.2 | Symbols: | nucleic acid binding |
chr3:3372461-3374026 REVERSE
Length = 326
Score = 129 bits (322), Expect = 6e-030
Identities = 80/151 (52%), Positives = 95/151 (62%), Gaps = 10/151 (6%)
Frame = +1
Query: 250 VDQFLREALQNPRERLSILRMEQDVEKFIRDPIQQQLEFQQLPTSYLRLAAHRVAQHYAL 429
VD FL EALQNPR RL+ILRME D++KF ++P Q Q EF PTSYLRLAAHRVAQHY L
Sbjct: 11 VDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHRVAQHYGL 70
Query: 430 QSMVLLDN--NLPDGSGSRIIVRKTPECRLPLIRLADIPVSLPSEESGVT---KVAIKQR 594
+M LDN DGS +RI+V KT E R P + L++IPV P E+G K+AIK R
Sbjct: 71 VTMA-LDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQP--ENGRPEGFKIAIKPR 127
Query: 595 PQKRSQMXXXXXXXXXXXXXXXXVEERKEEY 687
P++ S VEERKEEY
Sbjct: 128 PKRGS--GCGGSGSGVQQNLLRSVEERKEEY 156
Score = 54 bits (127), Expect = 3e-007
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +1
Query: 940 NRVAIFRDREIDRKDPDYDRSYDRYMQRFDPGFGFSGGPYTIQPMYTPALNYNTEFPQLG 1119
+RVAI RDRE DR DPDYDRSYDRY++ G FS P++ P ++ FP +
Sbjct: 215 SRVAIIRDREKDRYDPDYDRSYDRYVRVMPSGQSFSP-----MPIHIPF--HDGFFPHMP 267
Query: 1120 STHGPQISTEHQPRP 1164
H ++ H P
Sbjct: 268 RGHQANLNYGHPLNP 282
>TAIR9_protein||AT3G56680.1 | Symbols: | nucleic acid binding |
chr3:20991537-20993446 FORWARD
Length = 354
Score = 126 bits (315), Expect = 4e-029
Identities = 77/160 (48%), Positives = 96/160 (60%), Gaps = 7/160 (4%)
Frame = +1
Query: 214 GGDKLSEDALNQVDQFLREALQNPRERLSILRMEQDVEKFIRDPIQQQLEFQQLPTSYLR 393
GG + + N VD FL EAL N R RL+ILRME DV++ +++P QQQ EFQ PTSYLR
Sbjct: 13 GGSVIGDYGFN-VDPFLVEALHNSRHRLTILRMELDVQRLLQNPEQQQFEFQHFPTSYLR 71
Query: 394 LAAHRVAQHYALQSMVLLDNNLPDGSGSRIIVRKTPECRLPLIRLADIPVSLPSEESGV- 570
LAAHRVA HY L + V + DG+ +RI+V KT E + P +RL++IPV+ SE
Sbjct: 72 LAAHRVANHYGLATAV--QESGADGNENRILVTKTTESKFPAVRLSEIPVAKQSENGKFE 129
Query: 571 -TKVAIKQRPQKRSQMXXXXXXXXXXXXXXXXVEERKEEY 687
KV+IK RP K S VEERKEEY
Sbjct: 130 SRKVSIKTRPSKGS--GYGAGDLEKNRGPLRSVEERKEEY 167
Score = 59 bits (140), Expect = 8e-009
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Frame = +1
Query: 934 PNNRVAIFRDREIDRKDPDYDRSYDRYMQRFDPGFGFSGGPYTIQPMYTPALNYNTEFPQ 1113
P +RVAIFRDRE DR DPDYDR + RY++ F+ P+ IQ + TP + +
Sbjct: 225 PTSRVAIFRDREKDRFDPDYDRRHQRYIRSLPVNQNFNLPPFNIQQIPTP-------YYE 277
Query: 1114 LGSTHGPQISTEHQP---RPLPQHLPGPWVAPS-------PPAGIGYGHP 1233
+G T QI + P P P + P+ P A + Y HP
Sbjct: 278 MGFTGYNQIPSPPAPLGFGPHPSSIMSPYGTTMDAMYMHWPNAAMMYAHP 327
>TAIR9_protein||AT2G40960.1 | Symbols: | nucleic acid binding |
chr2:17095637-17097368 FORWARD
Length = 352
Score = 123 bits (308), Expect = 3e-028
Identities = 76/149 (51%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Frame = +1
Query: 250 VDQFLREALQNPRERLSILRMEQDVEKFIRDPIQQQLEFQQLPTSYLRLAAHRVAQHYAL 429
VD FL EALQNPR RL+ILRME DV++F++ P QQQ EFQ PTSYLR AAHRVA HY L
Sbjct: 21 VDPFLVEALQNPRHRLTILRMELDVQRFLQSPDQQQFEFQHFPTSYLRFAAHRVANHYGL 80
Query: 430 QSMVLLDNNLPDGSGSRIIVRKTPECRLPLIRLADIPVSLPSEESGV---TKVAIKQRPQ 600
+ V + DG+ SRI+V K+ + R P RL++IPV E+G KV IK RP
Sbjct: 81 ITSV--RDGGADGNESRIVVTKSSDSRFPAARLSEIPVK--QSETGKFEHMKVVIKPRPT 136
Query: 601 KRSQMXXXXXXXXXXXXXXXXVEERKEEY 687
K S M VEERKE+Y
Sbjct: 137 KGSGM----EGDELKGGLLKSVEERKEDY 161
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,898,391,618
Number of Sequences: 33410
Number of Extensions: 1898391618
Number of Successful Extensions: 102986645
Number of sequences better than 0.0: 0
|